Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00296 ATGTACGGCGGCGCCTCCTCCAAGCTCGgccgcggcgctccgaaccgccgccactcctccttcccccctccgccgccgaaccgtccctccgcccctgccggccgccTCTCCATGGGCGCCTCCTCCCGCAACGCCGCGAAGGAGACGGCGGCGCCGGCGGCTGAGGAGACCTTCCGCCTTACCTCCGGCAGCAACTCGCTGGCGTTTTCCATGATCATACGGCTCGCGCCCGACCTCGTTGAGGAGATCAGGCGCGTGGAGGCGCAGGGCGGCACCGCGCGTATGAAGTTCGGCCCCAATCCTCACAATCCCATCGGAAACATTATTGATGTTGGTGGGAAGGAGTACAAATTCACGTGGTCAAGGGAATTGGGTGATCTCTGTGATATTTACGAAGAGTGCCGAAGTGGCGAAGATGGAAATGGTTTGCTTGTTGAGTCTGGGTGTGCCTGGCGAAAGCTGAATGTGCAGCGTATCTTAGATGAGTCCACCAAAAATCATGTCAAAAGGCGGTCAGAGGAAGCTGAACGCAAGATGAAGTCTCGCAAAGCCATTGTCTTAGAGCCAGGGAACCCATCTATGAAGAGTCAGCTAAAGGCATTAGCAGCTGTTGAGGCTACACCATGGAAGAATTTCAATAAAAAGAAAGAGGCTGCCCTTAAGAAAAGGAAAGAGGGAACACTTCAAGTTGTCGGACCCCCAAAATCTTCCCATAGATCTGGATTGACTTCAACAAATGCTGCCACCAAGGGCAGACATTCCTCTCCTCTTCCATCCCAACCAGATCCTTTTGCTGCTTCATCTTCTCCACTGGGACCTTTAAATATGTCCAAGAGCCTTGAGGATGCTGTCCCATCACAAATGACAGGCAAGCAAGATACTAATGCTGTCTCTGAGAGAGAAATCCCTTCCAGGACAAACATTGCCACGAGGAACACACCGGGAGGCAAGGGAAATAGTGGGTCTAAACCAGCTGATTTGCAGGGCATGTTAGTTTCTCTTCTAAAGGACAAACCTAATGGAATGACTTTGAAGGCCTTGGAGAAAGCTGTTGGAGACACATTTCCAACTTCCATAAAGAAAATTGAGCCAATTATAAAAAAAATTGCAAAATATCAGGCTCCAGGAAGGTATATTATGAGACCAGCAGTAGATTTGGAAAGTTTAAATAAACCTCAAACTGAAAGCGGAAGTTCTCCTGATGACAATCACAGCCAGATACCTGCTCGTGAAGAGTTTCATGATCAGGCATCAGCTCCACAGGAAAGATCTGAAGAGAAAGCCCCAAATGTTGATTTGGAGGAAATGGTCAAAGTAAAATCCAAAGTAGAAGAAGAACCAAACAATTGTGAAAAAATTGATGCCCAACATACTTCTCCTGATATGGTTGCTGACAAAAAAGGTTCTGATCATAGTGAAGGGCAGGCAGGCACCTCCagtgatagtggaagtgacagtgacagtgaaagtgacagcagtgacagtggaagtgatagtggaagccacagtaggagtagaagtagaagtcctgccggaacagggagtgcgagtagtagtgatagtgaaagtgatGTATCATCGAGCAGCAAGGAGGGACTGGAGGGATCTGATGAGGATGTAGATATTATGACTAGTGATGATGAAAAAGAGTCAAAACAAAAAATAGAAGCCTCTGATCAAAAGATGCCCTTACCCAATCCTGTAATATCTCCTGAGCGAAGATCAATTCAGAATGAGGTTGGTGAGAAGCAAGATGGTAATGAATCTGATGCAGTTGAAATTGAAAAGGACTTACCTGAGGATCAGGAGGCTGAGATGGCTCTAGATACGGCTATCATTTCTAATAGAGGTGGAGAATATGTAGAAGAGACAAGGCCGTTTTCACTTGACTATCAACAGCTCCAGGAACGCCAAAATTATATAGGGAGTTTGTTTGATGAAAGAGAAAATGAAGTTAAAGATAGCTCTAAGCATGAACAGTCTGACAGCTCTGATAGGTTATATAAAGGTAAACACAAGAGAGGTTCTGATATGAAGAATATTGATGAGAAATCAGAAGGTGCAAAGAGGTTGAAAGCAGGAAGCTTGAGCCGTGAACCATTTTCTCCCAGTATGGATGTGCAGACACTCGAGAATTCTCAGAACTTATCTCCTGATGAATTTACTGAAGACATCTGTAAGGGACCTAATGTACAAATGCCAAACAGAGCTGATAGACCAGGGAATTCAAGTGTTAGCTTACCCAAAGAACCCAATCGAGCATTTCCTGGAAAATCTAGTTCAGAACAAACAGGTCGAAGATCCATAGATCAAACCATTTCAGAATACCCTTCCTATCCATCGGAAAAATCAGATAAACAGGGTGAAAGCATAAGGCATGGCAAAAAACACTCAGGAAAGGACTTCCGTGCTCGTGAAGCCTCTGTGCACAAAGATAAATCTCATAGAGATGGCTTGAATGAGGATATTCATGCCACTGAGAAAAAAGCCCCCAGGAATTCCAGGGATGATAATAGAAGTAAACAGTCACTATCCATGGATTCTTATTACCAAAAACAAGGTGAAACGGTTGGTAAATTAAAAGAAGGCCGACAAAGTACACAGTCACACTTCGGAGCATCACCTAAGGACAAAAATAGAATTGGTCTTAATCAATCCCCTGTAACTAATGGGCGAGGTATCTCTCTTCAAAGAGAGCTTTCAGACTTGGAGTTGGGTGAACTCCGTGAGTCCACTCCAGATGAAACTCACATAACAAAGCAATTTGAACGTAAAGGTTCATTTAAACATTTGGAGGACAGAGTAAACACTTCAGAGGAGAGGAATCCAGATGTTACTAAAGTAAAACCTTCATTGAAAGCAACTTCAGATTCAGGAAAGCCAGCCTCAGCATTTGTAAATTCTGGTTTTCCCAGTAATTTGGACAGTTCTAATAAAAAGAACTCAGATAATCATTTTGAAGATTCAACAAAATCTCGTTCTAGAGTTGCACAGATTCATTCACAATATTCAAAAGCAGATCATGCAGAAGAAGGATCTCAAAACAAATTGGCAGAAATAAGCAGTAAATTTAGAAATAATGAATCTGGGACCGGCCAAGATATTGACTTGGAAATTCGCAATGAAAGCAATAGAAGAGTGCCTGCACATGCATCTAAACAAGACAGTAAACGGGGAATGGTTTCCTACCCTATGAAAGAAAGTAAAAGACAAACACCTAATTCAGTAGAAGTGATGGCTTATGGAGGAAAGGATTCTGTGTTTGCAGATAGAAATCATGGTGATCAAAAGAAGAGAGAATCATCTTCAGACGAAAATAGTTGCTCTTATTCGAAGTATGAAAAGGATGAACCTGAATTGAGGGGACCGATTGGGACTCTTTCACAATATCAAGAATATATGCAGGAGTATCGTGATAAATTTGATAGTTACTGCTCCTTGTACAAGATTTTGGAGAATTACAAGGACAAGTTTCAGAAACTAGGCAAGGATTTAGAATATGCTAAAGACAGGGATATGGATAGGTATTATGAAATCTTGCAGCAGATGAGGGAATCCTATCGACACTGTGCACCGAGACACAAGAGATTGAAGAAAATATTTGTAGTTCTTCATATGGAAGTGGAGACAATTAAGCAAAGGATCAAAGACTTTGCAGAAGCGTTTAATAAATGA 3675 0.4003 MYGGASSKLGRGAPNRRHSSFPPPPPNRPSAPAGRLSMGASSRNAAKETAAPAAEETFRLTSGSNSLAFSMIIRLAPDLVEEIRRVEAQGGTARMKFGPNPHNPIGNIIDVGGKEYKFTWSRELGDLCDIYEECRSGEDGNGLLVESGCAWRKLNVQRILDESTKNHVKRRSEEAERKMKSRKAIVLEPGNPSMKSQLKALAAVEATPWKNFNKKKEAALKKRKEGTLQVVGPPKSSHRSGLTSTNAATKGRHSSPLPSQPDPFAASSSPLGPLNMSKSLEDAVPSQMTGKQDTNAVSEREIPSRTNIATRNTPGGKGNSGSKPADLQGMLVSLLKDKPNGMTLKALEKAVGDTFPTSIKKIEPIIKKIAKYQAPGRYIMRPAVDLESLNKPQTESGSSPDDNHSQIPAREEFHDQASAPQERSEEKAPNVDLEEMVKVKSKVEEEPNNCEKIDAQHTSPDMVADKKGSDHSEGQAGTSSDSGSDSDSESDSSDSGSDSGSHSRSRSRSPAGTGSASSSDSESDVSSSSKEGLEGSDEDVDIMTSDDEKESKQKIEASDQKMPLPNPVISPERRSIQNEVGEKQDGNESDAVEIEKDLPEDQEAEMALDTAIISNRGGEYVEETRPFSLDYQQLQERQNYIGSLFDERENEVKDSSKHEQSDSSDRLYKGKHKRGSDMKNIDEKSEGAKRLKAGSLSREPFSPSMDVQTLENSQNLSPDEFTEDICKGPNVQMPNRADRPGNSSVSLPKEPNRAFPGKSSSEQTGRRSIDQTISEYPSYPSEKSDKQGESIRHGKKHSGKDFRAREASVHKDKSHRDGLNEDIHATEKKAPRNSRDDNRSKQSLSMDSYYQKQGETVGKLKEGRQSTQSHFGASPKDKNRIGLNQSPVTNGRGISLQRELSDLELGELRESTPDETHITKQFERKGSFKHLEDRVNTSEERNPDVTKVKPSLKATSDSGKPASAFVNSGFPSNLDSSNKKNSDNHFEDSTKSRSRVAQIHSQYSKADHAEEGSQNKLAEISSKFRNNESGTGQDIDLEIRNESNRRVPAHASKQDSKRGMVSYPMKESKRQTPNSVEVMAYGGKDSVFADRNHGDQKKRESSSDENSCSYSKYEKDEPELRGPIGTLSQYQEYMQEYRDKFDSYCSLYKILENYKDKFQKLGKDLEYAKDRDMDRYYEILQQMRESYRHCAPRHKRLKKIFVVLHMEVETIKQRIKDFAEAFNK 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00296 1224 MobiDBLite consensus disorder prediction 1015 1037 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 405 472 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 756 784 - -
Cca11g00296 1224 Pfam Occludin homology domain 1122 1219 IPR010844 -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 217 326 - -
Cca11g00296 1224 SUPERFAMILY occludin/ELL-like 1123 1220 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 949 979 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 902 947 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 642 693 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 785 842 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 233 319 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 980 994 - -
Cca11g00296 1224 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 8 1221 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 389 404 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 1038 1053 - -
Cca11g00296 1224 ProSiteProfiles Occludin/ELL (OCEL) domain profile. 1115 1223 IPR010844 -
Cca11g00296 1224 Coils Coil 1151 1171 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 388 602 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 860 896 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 701 720 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 1088 1120 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 1 53 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 640 1120 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 576 593 - -
Cca11g00296 1224 MobiDBLite consensus disorder prediction 493 530 - -
Cca11g00296 1224 Gene3D - 1126 1221 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00296 - - gmx:102660010 1838.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00296 11 3699765 3709169 Cca11g00296 11 3699765 3709169 ECH