Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00295 ATGTTGTTGCCTACCATTGGAGTAGAGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAACCCAGAGACACCACCACTTGGTTGTGAGAGAAATTGGTGAGGAGATTGATTTAGAAATTGGACCTGGGGAGGATGACCCTTCATTTGGTAACACTACTCTAATTGGTGCACCAATGCGGGAATCTTCCGCAGAAGAACATGGTGAGAGCAAGCAGATGGGGATGGTTTCTCAGCTTCCTAATGATGCTCAAGATATGTCCAAGACCCAACAAGTAAAAAGGAAGAAAAAGGTTGTTAAAAGATGGAGAGAAGAATGGGCAGATACCTATAAATGGGCTTTCGTTGATATGAAAGATGGAACACCAAGGATTTTCTGCTCTGTTTGCAGGGAGTATGGCCGGAAGCATAGAAGAAATCCTTATGGTAATGAGGGCAGTCGTAATATGCAGATGAGTGCCCTGGAAGAACACAATAACAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCCAAAGATAAAATTGTGGTTGACAAGCCTGTTTATGTAAAAGTTGCCATGTCAAAAACAGCGGGATCAATTCTTGAAGCTACACTGAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAGGAGGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGTTATGTTAACATCATGGAGCGCCTGTTGGAACCTGAACGAATGATTGTTTTTCGTGTTTCATGGGTGGATGATAGGGGTGAGACACATGTTAATCGGGGATTTAGGGTACAATTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAAAATGCTTTATCACCGTACAAATTAGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAAGTGATAATGAAATTATGCATTTTTGCCAAAGTTTCATGAGTGAGATGTATCGTTACCTAGGGCCTGACAAGGACCTTCCATCAGAGGAAATGGGTGTTGGTACCCGAGAAATGGGGTATCTTTTTGGACAGTATAGACGTCTAGCTGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGATCCAGTCTTCGTCCCGAAGCTACTGGCTATGGGCTGGTTTTCTTTGCCCAGATCATGCTTGCCGACATGAATAAAGAACTTAAAGGATTAAGGTGTGTTGTGAGTGGTTCTGGAAAGATTGCAATGCATGTTTTAGAGAAGCTAATTGCTTATGGTGCTCTTCCAATTTCAGTATCAGATTCTAGAGGATATTTGGTTGATGAGGACGGATTTGACTTCATGAAAATATCATTTTTGAGGGACATTAAAGCTCAACAAAGAAGTTTGCGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATCTTGCATTTGCTTGTGCTTCACAGAATGAAATTGATCAATCAGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTAGTAGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTCTGAGGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCTGGTGCTGGAGGGGTCGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGAACTGGTCACCAGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAGACAAACTTATCAGAGAGCTATCAAAGCTGCAACCGACTTTGGTTATCAAAAAGAAAGCCCTGAGGCTCTGGTACATGGAGCGGTCATATCTGCCTTTCTAACTATTGCTCAGGCCATGACTGATCAAGGCTCTGTATAG 1917 0.4204 MLLPTIGVEMNSAMDDMNLIQQTQRHHHLVVREIGEEIDLEIGPGEDDPSFGNTTLIGAPMRESSAEEHGESKQMGMVSQLPNDAQDMSKTQQVKRKKKVVKRWREEWADTYKWAFVDMKDGTPRIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKPVYVKVAMSKTAGSILEATLKRDPHEVEFIQAVQEAVQALERVIAKNSRYVNIMERLLEPERMIVFRVSWVDDRGETHVNRGFRVQFNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMHFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQIMLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDSRGYLVDEDGFDFMKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWNERCDLAFACASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMNWSPEDFESKLQEAMRQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00295 638 Gene3D Leucine Dehydrogenase, chain A, domain 1 241 376 - -
Cca11g00295 638 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 389 636 IPR006096 GO:0006520|GO:0016491
Cca11g00295 638 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 389 636 IPR036291 -
Cca11g00295 638 Gene3D - 395 560 - -
Cca11g00295 638 PANTHER BNAA06G02140D PROTEIN 6 638 - -
Cca11g00295 638 SMART ELFV_dehydrog_3 390 636 IPR006096 GO:0006520|GO:0016491
Cca11g00295 638 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 243 370 IPR006097 GO:0006520|GO:0016491
Cca11g00295 638 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 197 382 IPR046346 -
Cca11g00295 638 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 6 638 - -
Cca11g00295 638 Gene3D Glutamate Dehydrogenase, chain A, domain 3 567 638 - -
Cca11g00295 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 300 314 IPR006095 GO:0006520|GO:0016491
Cca11g00295 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 379 401 IPR006095 GO:0006520|GO:0016491
Cca11g00295 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 421 441 IPR006095 GO:0006520|GO:0016491
Cca11g00295 638 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 558 569 IPR006095 GO:0006520|GO:0016491
Cca11g00295 638 Gene3D Glutamate Dehydrogenase, chain A, domain 3 197 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00295 Cca-Chr11 3684781 3693569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00295 219 516 EF-hand Containing Proteins AT5G07440 29.470 1.07e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00295 K00262 - gmx:100788009 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00295 11 3684781 3693569 Cca11g00295 11 3684781 3693569 ECH