Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00293 ATGGGTAGCTCCGGTGAGTCGAACATGAACGGAATCGACGCGTCCGTCGGTGGCTTGGTTTGGGTCCGACGCCGAAACGGGTCCTGGTGGCCGGGTCGGATAATGGGTCACCATGAATTGTCGGAGAGTTGTTTGGTTTCTCCGAGATCGGGTACACCCGTCAAGCTCTTAGGTCGTGAGGATGCAAGCGTGGATTGGTATAATCTTGAGAAATCCAAGCGGGTAAAAGCTTTTCGCTGTGGAGAGTATGATGAATGCATTGAGAAAGCAAAGGCATCTGCTGCAAATTCAAACAAGAAGGCAGTAAAGTATGCTCGCAGGGAAGATGCTATTCTTCATGCTCTTGAACTAGAGAGTGCTCACCTGGACAAGGAACCATTAAGCTTATGCTCCAGATTAGATAAATCTGGTAGTGATAATGGAGGATCAGCTGGAGAGTTACCACTTATGTCTAATTCTGAAGATGACAATGAGGATGTGATTGATGATCCGAGTGACTCTGATGACAATTCTAATTCAGCTCCAGAATTGTCACAATCTGGCATATCTTTTGAAGAGCCTAATCACAATGGTTCTTTAAAGATGCAATCTGTGCAAGGAAGGAGGAGGAGAACACCTAATGATTCAGAAGATGATGGATCTGAAGGAGTCAAGCGAATGAGAGGACTTGAGGACCTAGGCATTGGTGTAATGTCAAAAAGAAAGGTCCAAGGTACAGGTACATCGGAGATTGTTCAGCACATTAGTGCTTCACTCAACAATTCAACCACAGGGAACTGCCTGGCAAATGGGACTTCTGTAAATGGTGGTAAAGGTTATTCTGCGACAATGAAAAGGAAGAGATCACAAGTGGCAAATGCTCCTGAACTCCTGAAAAGGAAAAGTCGACGCCGACCATTGACTAAGGTTTTGGAGAGTACAGCCATGGTGTCAGTTCCTGTCATTTGTGATCAACTTCTCAGTTCAAGCAGTTCTCCACTTTGTGGGGTAACTGATGGAAGAATTTCAGGATTAGATTCTAATGATTCAAAGAAAACTTTTCCAGTGACAACACTTAATTCAGATGGTAATGAGGCTGCTTGTGAGAATGGAACTTCATTAATTGTTCATGACCATGGTAGTGATGATGCTTCCCAGATCAATCATGGGGTCAAGGAGAATGAGACTTCTGGCATACCAGAGCTAGTGGGCAAAAATTCTCCTGAAAAACTATTTGATGTGCCATTTGTTGGGGTTCTAGGGGAGGAAAAACGCACTCTGGGTTTCTCATCTGTACTAGTTTCTTGTTCATCTGGCAAGCCTCAAGTTAGTGCATTGGGACAACCATCTTCTGGTCACAATATTGGCCATAGAGCAGACAAAAGTAGTTCAAAGTGGCAGTCAAAAGGAAAGAGGAAATCGAGACATACTAGTAAAAATATAAAGCAACTCTCAAGAAAATATGAGGACACGGACCATCAATCCAGTGCTTATTTGCCAGGAATAGGAAACTCAGATGGAATCTATCAGGGTGCTGGTCAGAAAGTTGATTGGAATGAAATGGGTGCCCCTAACACTTCATACAATTGTACTTCTCAAGTTAAGGGCAAACCTGTTGCTGAAGGCCAACTAGATGGATTTCGGGACTTGAAGCATATCAAGGGTACAACAGTGGAGGCAAAGCTATTGCCCGATGTATCTCTCACACCTCAGAGATTGCTTCCTTATCGCCATTCACGCTTTACTGTTAACTCCAGATATCAAATGTCAGATTTTCCTGGAAGAAATCATTGTTCTGATGCTTCATTATACGATGTTAAGCTAGAAGTTAAATCCAGCTACCGGCCACAGCATGTGCCTTTGGTTTCTCTTGTGAGCAAACTGAATGGCAAAGCCTTCATTGGACACCCTTTGACGGTTGAGGTTTTGGATGAAGGTCATTGTGATAAAATGTTGAGTGGCATTGGATGTGACTTGGAGGCTAGTGATGTCTACTGTGTGGCCAAACCAAAATTGGTCAGCGGAAGAATACGATCCAAGAATTTGAGGCGTTTATCTAGTAAGTCTTCCAAGATGAAAAAATCTGGGCTTTCGAATAAAAAGATTCGGAAATTGTCATCATTGACAGGTCACAGGCAGTCAGAAGAGGGGAGAAAACCGGTGGTAGATAAGCTGAAGGGTCCAGTTATAGCCTGTATTCCCCTTACATTGGTATTCAGTAGGATACATGAAGCAGTGAGTGGTCAGGCACGGTCCACACACCGTGCAATACCAACATCTAATCCATGA 2268 0.4369 MGSSGESNMNGIDASVGGLVWVRRRNGSWWPGRIMGHHELSESCLVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKASAANSNKKAVKYARREDAILHALELESAHLDKEPLSLCSRLDKSGSDNGGSAGELPLMSNSEDDNEDVIDDPSDSDDNSNSAPELSQSGISFEEPNHNGSLKMQSVQGRRRRTPNDSEDDGSEGVKRMRGLEDLGIGVMSKRKVQGTGTSEIVQHISASLNNSTTGNCLANGTSVNGGKGYSATMKRKRSQVANAPELLKRKSRRRPLTKVLESTAMVSVPVICDQLLSSSSSPLCGVTDGRISGLDSNDSKKTFPVTTLNSDGNEAACENGTSLIVHDHGSDDASQINHGVKENETSGIPELVGKNSPEKLFDVPFVGVLGEEKRTLGFSSVLVSCSSGKPQVSALGQPSSGHNIGHRADKSSSKWQSKGKRKSRHTSKNIKQLSRKYEDTDHQSSAYLPGIGNSDGIYQGAGQKVDWNEMGAPNTSYNCTSQVKGKPVAEGQLDGFRDLKHIKGTTVEAKLLPDVSLTPQRLLPYRHSRFTVNSRYQMSDFPGRNHCSDASLYDVKLEVKSSYRPQHVPLVSLVSKLNGKAFIGHPLTVEVLDEGHCDKMLSGIGCDLEASDVYCVAKPKLVSGRIRSKNLRRLSSKSSKMKKSGLSNKKIRKLSSLTGHRQSEEGRKPVVDKLKGPVIACIPLTLVFSRIHEAVSGQARSTHRAIPTSNP 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00293 755 MobiDBLite consensus disorder prediction 201 222 - -
Cca11g00293 755 Pfam PWWP domain 18 107 IPR000313 -
Cca11g00293 755 MobiDBLite consensus disorder prediction 167 200 - -
Cca11g00293 755 MobiDBLite consensus disorder prediction 677 713 - -
Cca11g00293 755 MobiDBLite consensus disorder prediction 152 166 - -
Cca11g00293 755 PANTHER T17B22.17 PROTEIN-RELATED 1 751 IPR044679 -
Cca11g00293 755 ProSiteProfiles PWWP domain profile. 16 71 IPR000313 -
Cca11g00293 755 MobiDBLite consensus disorder prediction 677 693 - -
Cca11g00293 755 MobiDBLite consensus disorder prediction 436 497 - -
Cca11g00293 755 MobiDBLite consensus disorder prediction 133 223 - -
Cca11g00293 755 Gene3D - 5 119 - -
Cca11g00293 755 PANTHER TUDOR/PWWP/MBT SUPERFAMILY PROTEIN 1 751 - -
Cca11g00293 755 MobiDBLite consensus disorder prediction 436 450 - -
Cca11g00293 755 SUPERFAMILY Tudor/PWWP/MBT 14 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00293 Cca-Chr11 3657385 3662036 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00293 - - gmx:100817435 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00293 11 3657385 3662036 Cca11g00293 11 3657385 3662036 ECH