Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00289 ATGAGTTTCTTGAACTGGGTCCCTTTGTTCATCGTTTTTCACATCTTCGCTGCATCTCCCCACTTCTCATTAACTGATTCCTCCAAACAACTCCCCACCAACTTTCTAGATGCTGCCAATAAGGCTGAGGTATTTGATTGGATGGTCAGAATCCGGAGGAAGATTCATGAGAATCCAGAATGGGGTTATGAGGAATTTGAGACAAGTAAACTCATCAGAGCGGAATTGGATAAACTTGGTATCCCCTATAAACACCCTGTTGCAGTCACTGGTGTTATTGGCTTCATTGGGACAGGAAGACCACCTTTTGTTGCAATAAGAGCTGACATGGATGCTCTCTCCATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCACGCGTGTGGTCATGATGCTCATGTGACCATGCTTCTTGGTGCTGCAAAGATTCTCAAGGAGCATGAAAAAGAAATACAAGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGCCTTAGAAAATGTTACAGCTATTTTTGGATTGCATGTAGCGCCTAACTTTCCATTAGGTGAAGTGGCCTCTAGATCTGGTCCATTTTTGGCAGGAAGTGGTTTCTTTGAAGCAATAATTAGTGGAAAAGGAGGTCACGCTGCTATTCCTCAACATTCTATAGACCCCATTTTGGCAACTTCTAATGTCATTCTTAGCTTACAACACCTTGTTTCTCGCGAGGCTGATCCTCTTGATTCCCAGGTTGTGACTGTAGGAAAATTACAAGGAGGTAATGCATTCAATGTCATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAAGCAAAGCTTTGAGCAATTAAGACGGCGCATTGAGCAGGTTGTGACAGCTCAAGCTGCTGTGCTGAGGTGCAATGCAACTGTCAACTTCCTTGAAGAAGAAAAGCCTTTCTTTCCGGCAACCATAAACAACGGTGACTTGCATGAACATTTTCGGACTGTTGCAGGAAATTTGCTTGGCATCAATAAAGTTAATGACATGCAACCATCGATGGGAGCTGAAGACTTTTCATTTTATCAACAGGTTATACCTGGCTACTTTTTCATGCTTGGAATGCAGAATCCCTCACATGAAAAACTGGAACAACTACACTCACCCTATTTCAAGATCAATGAAGATGTACTTCCTTATGGAGCTGCACTTCATGCCTCATTAGCTGTTAGTTATCTTCTCAAACATCCGCAGGATGTACGGTCTGCAGAGGGGAAATATCACGATGAATTGTAA 1326 0.4321 MSFLNWVPLFIVFHIFAASPHFSLTDSSKQLPTNFLDAANKAEVFDWMVRIRRKIHENPEWGYEEFETSKLIRAELDKLGIPYKHPVAVTGVIGFIGTGRPPFVAIRADMDALSMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHVAPNFPLGEVASRSGPFLAGSGFFEAIISGKGGHAAIPQHSIDPILATSNVILSLQHLVSREADPLDSQVVTVGKLQGGNAFNVIPDSVTIGGTFRAFSKQSFEQLRRRIEQVVTAQAAVLRCNATVNFLEEEKPFFPATINNGDLHEHFRTVAGNLLGINKVNDMQPSMGAEDFSFYQQVIPGYFFMLGMQNPSHEKLEQLHSPYFKINEDVLPYGAALHASLAVSYLLKHPQDVRSAEGKYHDEL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00289 441 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 323 IPR036264 -
Cca11g00289 441 TIGRFAM amidohydrolases: amidohydrolase 48 410 IPR017439 GO:0016787
Cca11g00289 441 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 441 IPR017439 GO:0016787
Cca11g00289 441 SUPERFAMILY Zn-dependent exopeptidases 43 425 - -
Cca11g00289 441 Gene3D Zn peptidases 48 408 - -
Cca11g00289 441 Gene3D - 213 331 - -
Cca11g00289 441 PANTHER AUXIN CONJUGATE HYDROLASE 1 441 - -
Cca11g00289 441 CDD M20_IAA_Hyd 48 423 IPR044757 GO:0009850|GO:0016787
Cca11g00289 441 Pfam Peptidase dimerisation domain 214 312 IPR011650 -
Cca11g00289 441 PIRSF Amidohydrol_AmhX 35 427 IPR017439 GO:0016787
Cca11g00289 441 Pfam Peptidase family M20/M25/M40 105 419 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00289 Cca-Chr11 3634000 3637927 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00289 K21604 K14664 gmx:100789077 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00289 11 3634000 3637927 Cca11g00289 11 3634000 3637927 ECH