Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00286 ATGCAACGTGTGGTAACCATGCACTCACATTACCCTTTGGCCTTGCCTTGCACTTCGCCTAAGCCAAAAGAAACCTCCTCTTCTTCCTCACCAATTCAACAACATGCTAGGGTCACTCACAATGCTGCTCTTTCATACTCAACTCTTCATACATTATTGGAGATGAATAGGATGAGAGGGGAAATTGAAGAGGGCAAGGAGATTAGCCCAATGTTTCCAAGGTTGCATGTTAAAGATGCAGAGAAAGGAGGGCCAAAAGCACCCCCAAGGAATAAGATGGCACTCTACGAACAATTCAGCATTCCTTCTCAAAATTTTGCTTCAGGATCACCATCCTTATTTCCACTCCCGTTCAGAAACTACACAGGTCCTACAGCATCGAGCCACGTGAGTCAAGTGAAGATCAGTAGCAGTCAAAGCATCCAATTCGGCACCTCCATTGCACCTTCTATTCTGCCTGAGAAAACTCAAACATATAATTCCAGAAGGAATAACTTAACCAAATTCACGCAAGAAGATTTCATCGATAGTAAGAATTCTCTGAAAACACTTGATGGTGAAGATTCTTTTGTAACTTCTGGTCCTGCATATGCAAAAAAATCATGTTGTAGCATCATCCAAAATAATAAAGATGAAGACAAACTTGCTCGTTGTAATTTGAGCTATTCGCTTAAAAGTCTTGATTCATTTAGGAAGAAGGTGAATTCACTTGGTGTTGTTGAACTGAAGTCAGCACAATATGGGAAGAACCAGATGGCAGAGCATATAGAAGTGAGTCAAATTGATCAGAAGATAGAGGAAGGGCTTACTCACTCGTTAGATGGTTTTGGTGGCATGCCAGATGCATCATCATTAATCTCATTGGTTAAAGGTAAGAATTCTATATCAATGAATAAAGAAAATAGATCTTTGAAGGATGAAATTCGAAGTATTTCAGTAGATAGCTTGAAAACATTGCAAGGTGGCAGTGTCCATACACATGAAGATCATGCAGCTTTTGGGGACAAAATCAACTCAAGGGACCATCACATTGAGAAGCCAACAGCTAGTGATGTTCAAAAATGTCCTGCAGAGTTAGAAATTGGTAGAAGGTTCTTCCTGGATAAGGGTGATAGGAATGAAGATGAAGAGACAAACAGGCATTATGGTGCCTTAAATAAAGTCAATTCGGAATGTACAATGGTTATGGATATTACCCCTGACAATGTTGTAGAAGCTATAGGTGTACAACAATTTTGGAAAGCCAGAAGAACTATCATCAATCAACAGAAAATCTTTGTCATGCAAGTATTTGAGTTGCATAGACTGATTAAGGTGCAAAGATTAATCGCAGGCTCACCTCATATATTGCTTGAAGATAACCTTTTACTTAACAAGCCACCACCAAAAACATCCACAACCAAGAAATTACAATCTGATGACTTTGTCGGTGAAAAACCATCCTCAGTTGTTAAACTTGACAGCAAATCTGGGAATGCCCCTCCTACCGAGCATGTTACAAACAATGCATTTGGGAAGATTCCCATTCCTTGTGTCAACAACATAACCAAAGGCCATGCTAATCAACTGCCAAACTACAGCCATCATTTAGGAAACCTTGCAGTAGCCTCTGCAGATTCAAATTCCAAACAGTCCCCAAGCTATGTCTACCCCCCACCAGGAAACCAGTGGTTAGTTCCTGTCATGTCCCCATCTGAAGGCCTAGTATACAAACCAATCATAGGGCCATGCCCTCCAAATGCAGGCTTCATGGCACCCATATATGGCACTTGTGGCACAGTGAACTTCAATCCAGGAAGCAAGGATGCTTCTTTAGATGCAGCTCTTGCTCCAAGTTCTCAACAAAAGTTTGGACTCCTTTCTGGTCCATCTTTACCCCAGTTTTTACCACCACCATTCGTGCCTCCATCTTCTATATCAGCTTCAGCTGTTGAGCAAATGGGGCAGTCTAATGGCCCGGAAAATCACCACTCATGTGGAGAAGTCAATTCTGCCATACTGCACCAAAGCTCATCTAACATCTCCAGCCCCACTAGTCAAGTGATGTCAATAAACATTTCAACTTACCATTCGGTGAAAGATAAAGAATTGCAGAGAAGCACAGCTAGCAGTCCATCCAAGAGGACGAGTGGAGAATTGCTTCCTTTGTTTCCTTTGGCACCAACATTTTGTCACACAGAAGATAGGAGCACACAGGTTGAACAACAGCCACGGGTAATCAAAGCTATGCCTCACAATCCAAAATCAGCTACTGAATCAGCTGCAAGGATATTCAGATCAATACAAGAAGAAAGGAAGCATTTGTAA 2307 0.4153 MQRVVTMHSHYPLALPCTSPKPKETSSSSSPIQQHARVTHNAALSYSTLHTLLEMNRMRGEIEEGKEISPMFPRLHVKDAEKGGPKAPPRNKMALYEQFSIPSQNFASGSPSLFPLPFRNYTGPTASSHVSQVKISSSQSIQFGTSIAPSILPEKTQTYNSRRNNLTKFTQEDFIDSKNSLKTLDGEDSFVTSGPAYAKKSCCSIIQNNKDEDKLARCNLSYSLKSLDSFRKKVNSLGVVELKSAQYGKNQMAEHIEVSQIDQKIEEGLTHSLDGFGGMPDASSLISLVKGKNSISMNKENRSLKDEIRSISVDSLKTLQGGSVHTHEDHAAFGDKINSRDHHIEKPTASDVQKCPAELEIGRRFFLDKGDRNEDEETNRHYGALNKVNSECTMVMDITPDNVVEAIGVQQFWKARRTIINQQKIFVMQVFELHRLIKVQRLIAGSPHILLEDNLLLNKPPPKTSTTKKLQSDDFVGEKPSSVVKLDSKSGNAPPTEHVTNNAFGKIPIPCVNNITKGHANQLPNYSHHLGNLAVASADSNSKQSPSYVYPPPGNQWLVPVMSPSEGLVYKPIIGPCPPNAGFMAPIYGTCGTVNFNPGSKDASLDAALAPSSQQKFGLLSGPSLPQFLPPPFVPPSSISASAVEQMGQSNGPENHHSCGEVNSAILHQSSSNISSPTSQVMSINISTYHSVKDKELQRSTASSPSKRTSGELLPLFPLAPTFCHTEDRSTQVEQQPRVIKAMPHNPKSATESAARIFRSIQEERKHL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00286 768 MobiDBLite consensus disorder prediction 485 499 - -
Cca11g00286 768 PANTHER FLOWERING PROTEIN, PUTATIVE-RELATED 58 768 - -
Cca11g00286 768 MobiDBLite consensus disorder prediction 462 499 - -
Cca11g00286 768 PANTHER PROTEIN EARLY FLOWERING 3 58 768 IPR039319 GO:2000028
Cca11g00286 768 MobiDBLite consensus disorder prediction 693 713 - -
Cca11g00286 768 MobiDBLite consensus disorder prediction 13 34 - -
Cca11g00286 768 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00286 Cca-Chr11 3572081 3577056 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00286 K12125 - gmx:100820110 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00286 11 3572081 3577056 Cca11g00286 11 3572081 3577056 ECH