Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g00280 | ATGAGAAGCATTCGGCAGCGTGGGTTTTCGACATTGCTTCCCATACCTCACCGAACCATCCCCGAGGCTCGAGGTCAGGATCTGGACTTGATAACCGTAGCCCACAGCCACGTGATCCACTCCCACTGGCACAAGCTCCACTCTCTCTCACTCTCACTCACACCCTTCCGTCTCGCACACCTCCTCCTGGCCCTCCAAAACGACCACGTTTCGTCCCTGAAACTCTGGAACTGGGTCCTCCAACATAGCCCCTCCTCTCACACCCTCCAATCCCTCTCCATCGTCGCCCACACCCTCGCCAAACACCGCCAATTCAAAACCCTGCAAAGAATCCTCTCTTCGCACCCCCCCTCCACCCTCTTCGATTCCCTTTTACACACCTACCGTCTCTGCCACTCTTCCCCTCTCGTCTTCGACTCCCTCTTCAAAACCCTCGCCCACACCCACAAGTTCCGAGACGCCACCCGCGTTTACGTCCTCATGAAGGAACACGGCTTCTCCCCCACCGTCGAGTCCTGCAACGCCTTTCTAAGCTCTCTCCTCTCTCTTCGCAGACCCGACATTGCTCTCTCGTTTTACCGCGAAATTCGTCGTTCTCGCGTTTCGCCTAATGTCTACACTCTCAACATGGCTATGCGCGCTTATTGCATGTTGGGGGAACTCAATCGCGCTCTTGAAATTTTGCACTCCATGACGGATATCGGTTTGAGGCCCAATGTTGTGTCTTTTAATACTTTGATTTCGGGGTGTTGTAACAAGGGCTTGTTTGGAATGGCGTTAAAGGTCAAGTCTTTGATGGGGGAACATGGAGTGCAGGCTAATGTGGTTACTTTTAACGCTCTTATTAATGGGTTTTGTAAGGAGAGGAAGCTGCATGAGGCGAATAGGGTTTTCAGTGAGATGAAGGTTGCCAAGGTGGTTCCCAATGTTGTGACTTTTAATACTTTGTTGAATGGGTATGGTCAGGTTGGGGACAGTGAAATGGGGAGTAGGGTTTATGAGGAGATGAAGAGAAATGGGGTTAAGGCTGATATATTGACTTATAATGCGTTGATTTTGGGGCTGTGTAAGGAGGGGAAGACGAAGAAAGCTGCGGGGTTGGTTAGGGAGCTTGATAAGGAGAACTTGGTTCCCAATGCGAGTACTTTTTCTGCTCTTATTACTGGGCAGTGTGTGAGGAACAACTCTGAGCGTGCGTTTCTTGTTTATAGAAGCATGGTGAGGAGTGGTTGTTGTCCAAATGAGAAGACTTTCCAGATGTTGATATCTGCCTTCTGCAAGAATGAGGACTTTGATGGGGCTGTGCAGGTTTTGAGGGACATGTTGGATAGATTGATGAGTCCTGATTCCAGTACCTTGTTTGAGCTCTATGATGGACTTTGCAGGTGTGGGAAAAATCAGTTGGCATTGCAATTGTGTAGTGAGATGGAAGCTAGGCGTCTGTTGCCAGAAGGTTTTGACAAAGATAAAATAATCATTACCCTTCCACAAAATGAGAAAACTAACTGA | 1509 | 0.4911 | MRSIRQRGFSTLLPIPHRTIPEARGQDLDLITVAHSHVIHSHWHKLHSLSLSLTPFRLAHLLLALQNDHVSSLKLWNWVLQHSPSSHTLQSLSIVAHTLAKHRQFKTLQRILSSHPPSTLFDSLLHTYRLCHSSPLVFDSLFKTLAHTHKFRDATRVYVLMKEHGFSPTVESCNAFLSSLLSLRRPDIALSFYREIRRSRVSPNVYTLNMAMRAYCMLGELNRALEILHSMTDIGLRPNVVSFNTLISGCCNKGLFGMALKVKSLMGEHGVQANVVTFNALINGFCKERKLHEANRVFSEMKVAKVVPNVVTFNTLLNGYGQVGDSEMGSRVYEEMKRNGVKADILTYNALILGLCKEGKTKKAAGLVRELDKENLVPNASTFSALITGQCVRNNSERAFLVYRSMVRSGCCPNEKTFQMLISAFCKNEDFDGAVQVLRDMLDRLMSPDSSTLFELYDGLCRCGKNQLALQLCSEMEARRLLPEGFDKDKIIITLPQNEKTN | 502 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 414 | 448 | IPR002885 | - | |
| Cca11g00280 | 502 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 11 | 500 | - | - | |
| Cca11g00280 | 502 | Gene3D | Tetratricopeptide repeat domain | 62 | 232 | IPR011990 | GO:0005515 | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 347 | 380 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 417 | 449 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 382 | 415 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 206 | 239 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 172 | 205 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 311 | 344 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 241 | 274 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 276 | 310 | IPR002885 | - | |
| Cca11g00280 | 502 | TIGRFAM | PPR: pentatricopeptide repeat domain | 138 | 170 | IPR002885 | - | |
| Cca11g00280 | 502 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 11 | 500 | - | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 379 | 413 | IPR002885 | - | |
| Cca11g00280 | 502 | Gene3D | Tetratricopeptide repeat domain | 372 | 490 | IPR011990 | GO:0005515 | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | IPR002885 | - | |
| Cca11g00280 | 502 | Pfam | PPR repeat | 270 | 302 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 239 | 273 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 204 | 238 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 309 | 343 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 134 | 168 | IPR002885 | - | |
| Cca11g00280 | 502 | Pfam | PPR repeat | 458 | 479 | IPR002885 | - | |
| Cca11g00280 | 502 | Pfam | PPR repeat family | 385 | 427 | IPR002885 | - | |
| Cca11g00280 | 502 | Pfam | PPR repeat family | 205 | 252 | IPR002885 | - | |
| Cca11g00280 | 502 | Pfam | PPR repeat family | 308 | 357 | IPR002885 | - | |
| Cca11g00280 | 502 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 449 | 483 | IPR002885 | - | |
| Cca11g00280 | 502 | Gene3D | Tetratricopeptide repeat domain | 304 | 371 | IPR011990 | GO:0005515 | |
| Cca11g00280 | 502 | Gene3D | Tetratricopeptide repeat domain | 233 | 303 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g00280 | 136 | 500 | Glycosyltransferase | AT1G05670 | 27.123 | 7.41e-45 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g00280 | - | - | ccaj:109808905 | 989.949 |