Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00272 ATGAAGGTGCTAGTTTTGTTTGTTGCTACGGTCCTAGCTGCATCATGGCAATGCCATGGAACAATGTACCAAACTTTCCCTCTCCAAATGAAAACCGGGTCTGACTCTGACGTGGATGTATCTTGTGCCAGTTGGAGGCTTGGTGTGGAAGCACACAACCTCATCAACTGGCAAACCGTTCCTCTTAAGTGCCAAGAATACATAGCCAGTTACCTTCTTGATGGCCAGTATAGATCAGACTCCAAAACCGTTTGTCGTGAAGCTTACTTCTACGCCAAAAAACTTAACTTAACTAACAGAGATATTTTCATTTTCGACGTCGATGAGACCCTACTCTCTAACCTCCCTTATTTTGCTAACCATGGATTCGGGGTGGAACCACATAACAAGACAGCGTTTAGTAAATGGGTTGCCTCCGGTGAAGCATTTGCACTTCCCGAGACCCTTAAACTCTACAACAAGATCTTGTCTCTTGGCATCAAGGTTGTTTTCTTATCAGAAAGAAGACTGGATCAAAAGGATGTTCTGGTTAAGAACTTGAAGGATGCTGGGTACCCCACATGGGAAAAGTTAATTGTCAGGGATCCAGCTTCCTTTGGTGGTGATGATACATTTGAATACAAATCAGCTGAGAGGGTGAAGTTGGTGGGAAGTGGATACAGAATCATTGGGAACATTGGAGACCAATGGAGTGATATTGTGGGAAGATACAAAGGCTTTAGGACCTTTAAGTTGCCAAATCCCTTGTACTACAGTTGA 759 0.4361 MKVLVLFVATVLAASWQCHGTMYQTFPLQMKTGSDSDVDVSCASWRLGVEAHNLINWQTVPLKCQEYIASYLLDGQYRSDSKTVCREAYFYAKKLNLTNRDIFIFDVDETLLSNLPYFANHGFGVEPHNKTAFSKWVASGEAFALPETLKLYNKILSLGIKVVFLSERRLDQKDVLVKNLKDAGYPTWEKLIVRDPASFGGDDTFEYKSAERVKLVGSGYRIIGNIGDQWSDIVGRYKGFRTFKLPNPLYYS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00272 252 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 33 252 IPR005519 -
Cca11g00272 252 TIGRFAM plant-AP: plant acid phosphatase 33 251 IPR010028 GO:0003993
Cca11g00272 252 Gene3D - 38 252 IPR023214 -
Cca11g00272 252 PANTHER VEGETATIVE STORAGE PROTEIN 1-RELATED 2 251 - -
Cca11g00272 252 SUPERFAMILY HAD-like 96 236 IPR036412 -
Cca11g00272 252 PIRSF VSP 1 252 IPR014403 -
Cca11g00272 252 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 2 251 - -
Cca11g00272 252 CDD HAD_VSP 71 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00272 Cca-Chr11 3383888 3384869 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00272 - - gmx:100795218 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00272 11 3383888 3384869 Cca11g00272 11 3383888 3384869 ECH