Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00265 ATGGGGAGCTCTGAAGGGTTGGGAACGCCGGCGAAGGAACACGGTGTGACGAAGCCCATATCAATGGCTGGCCCAACGGTTACTGATTTGCAAAGGACTCTCGAATTAGAAAAGTTTCTCGCTGATTCGGGGCTTTACGAGAGCGTGGAGGAAGCTGACAAGAGAGAAGAGGTTCTTCACCGACTTGAACAGATAGTAAAAAATTGGGTGAAGCAACTAACCCACCTAAGGGGATACACTGATCAAATGGTGGAAGATGCGAATGCTGTCATTTTGACTTTTGGTTCTTATCGGCTTGGGGTTCATGGTCCTGGGGCTGACTTGGACACTTTGTGCATAGGGCCCTCCTATGTAAACCGGGAGGAGGATTTTTTTTACACATTGCATGATATCCTAGCTAACATGGAGGAAGTCACAGAATTGCAACCAATTCCAGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCTAGTATTTCTCGGTTGATTGTACCTGCAGATTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACTGTGCGAAGTTTGAATGGCTGCAGAGTTGCAGATCGAATTCTAAAGCTTGTACCTAATGTTCAGCATTTTCGTACAACACTTCGTTGCTTGAAATTCTGGGCCAAAAGGCGAGGCATTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCAATTCTTGTTGCTCAAGTGTGCCAGTTTTATCCAAATGCAGTTCCAAGTATGCTTGTTTCTCGTTTCTTTAGAGTGTATACACAGTGGGGGTGGCCAACTCCTGTTATGTTATGCCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTCGTAAAAATCCTCGAGACCGTTCCCATCATATGCCAATTATTACTCCTGCCTATCCTTGTATGAATTCCAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAACAGTTCCAATATGGCAACCGGATCTGTGGGGAAATAGAACTGAACAAAAGTTGTTGGAAGGCTCTGTTTGAACCATACAAATTCTTTGAAAGCTATAAAAATTTCTTGCAAGTTGACATAGTTGCTGCTGATGTTGATGACTTGCGTAGTTGGAAAGGTTGGGTGGAATCACGCCTTCGGCAGCTGACTTTGATGATTGAGCGTGACACCTTTGGGAAGTTGCAGTGCCATCCCTATCATCGTGAGTTTATGGATACTTCAAGGCACTGTTTTCATTGTGCTTTCTTTATGGGTCTGCAGAGGAAGCAGGGAGAGGTTGTTCAAGAAGGACAACAATTTGATATACGAGGGACAGTTGAGGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCTGGGATGGGCATTTATGTTTCTCATGTTCGCAGACGGCAAATCCCATGCTATGTGTTTCCTGATGGTTATAAACGATCTCGACCATCAAGACCAACATCACATGAGAATCATAAATTATTTCATGAAGAGGAGGTTTCTCGGGCTGTACATGAGAGAATTCGTAAGAGGAAGAATGATGATGGGGTGGGTGTGATGCAGAATGGTTTATTGAAAAGGAAATCTACTAGTCCTCCTGAGAATAGATTGGCAAGACACAACAGCCTTGGTGCTGGTGGTTTCTCAGTTGATGCTGTGTCTGATAGTCAAGAATTGAGAAATGTGGAGAGCAATCATTTGTCAAACAGTGGTCAAGATGAGTTGGATAGAACAGAGTCTCCTGAACCTGCCTCAAATTCTAGTGTTATTACAAATGATGGTGGTTCTTCTGAAGACAATGGATATGTATCAAGGGCAGGGGGTGTTGAGATGATCGACAATGTGCGATTTGAGGATACTACTTATGGGAATGATTCTGTTTCACCTGTGAAAAACAGAGCGGAAAATGGAAATGAAGTATTAAATGAGCTACAGGAGCAGTTGCAGCCAAATGCAATGCTAGGGATGGTTATTGATTCCGCTGGAAAGCTTCATTCAGAAGCTGTGCAAGAGCCGGTGATAAGGAGATTGAGTCTAGCCTCGACAGTGAACGAGGAAGGACTATATTATGCATTGGACCTTGGAGGGACTAATTTTCGCGTGTTACGTGTGCAATTGGGAGGCAAGGATGGTGGTATTATTAGTCAAGAATTTGCTGAGGTGTCAATTCCTCCTAATTTGATGGTTGGGACATCAGATGCACTCTTTGACTATATTGCAGCAGAGCTTGGAAAATTTGTTGCTCAAGAAAATCAACCTCCTGCTAGACAGAGAGAGCTAGGTTTTACCTTTTCCTTTCCTGTCATGCAAACGTCAATTGCTTCTGGGAATCTTATCAAGTGGACAAAAGGGTTCAGCATAGATGACGCAGTTGGTCAAGATATTGTGGCGGAATTAACAGAAGCTATTCAGAGACAAGGTCTTGATATGCATGTAACAGCTCTGGTCAATGATACAGTTGGGACATTAGCAGGAGGTCGATATGAAAACAACAATGTCATTGCTGCTATTATTTTAGGCACTGGAACAAATGCAGCTTATGTGGAACGTGCTCAAGCAATACCAAAATGGCATGGTCCTTTGCCAAATTCTGGGGAAATGGTTATCAACATGGAGTGGGGAAACTTCCGTTCATCTCACCTTCCATTAACTGAGTATGATTATGCATTAGATGCTGAGAGTTTAAACCCCGGTGAACAGATTTTTGAGAAGATAATTTCTGGCATGTACTTGGGAGACATTGTTCGTAGAGTACTATGCAAGATGGCTGAAGAAGCTTTCTTTTTTGGTGATGATGTTCCCCCAAAACTGAGAGTTCCGTTTATGCTAAGGACGCCGGACATGTCTGCAATGCATCATGACTCATCTGCTGATCTCAATGTGGTAGGAAGCAAACTGAAGAACATTTTCGAGATATCTGATACCTCCCTACAAGTGAGGAAGGTGGTTGTGGAGATTTGCAACATTGTTGCCACCCGTGGTGCTCGTCTTTCTGCTGCTGGCATCTTGGGTATCTTGAAGAAGCTGGGAAAAGATACCATGAGTGATGGTGAGGGTCAGAAGAGTGTGATAGCCATGGATGGTGGATTGTATGAGCATTACACCGAGTATAGCAAATGCCTAGAGAACACCCTTAAAGAATTGGTTGGTGAAGATGTCTCAGAAAGTATTATCATTGAGCATTCCAATGATGGTTCAGGCATTGGTGCTGCTCTTCTTGCTGCCTCTCACTCCCAAGTTGATGTAAGTAGAGTGCCATCAAGGCAAAGTCATTGTAGCTTAGCTTACTGTGTCAAAGGCATGAGGAATATATATGTATTTATGAGAGGCCAAAGAGAATCTCACTAG 3387 0.4302 MGSSEGLGTPAKEHGVTKPISMAGPTVTDLQRTLELEKFLADSGLYESVEEADKREEVLHRLEQIVKNWVKQLTHLRGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTLHDILANMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPADLDISDVSVLHNVDEPTVRSLNGCRVADRILKLVPNVQHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLAILVAQVCQFYPNAVPSMLVSRFFRVYTQWGWPTPVMLCPIEENELGFPVWHPRKNPRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNRICGEIELNKSCWKALFEPYKFFESYKNFLQVDIVAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHREFMDTSRHCFHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMGIYVSHVRRRQIPCYVFPDGYKRSRPSRPTSHENHKLFHEEEVSRAVHERIRKRKNDDGVGVMQNGLLKRKSTSPPENRLARHNSLGAGGFSVDAVSDSQELRNVESNHLSNSGQDELDRTESPEPASNSSVITNDGGSSEDNGYVSRAGGVEMIDNVRFEDTTYGNDSVSPVKNRAENGNEVLNELQEQLQPNAMLGMVIDSAGKLHSEAVQEPVIRRLSLASTVNEEGLYYALDLGGTNFRVLRVQLGGKDGGIISQEFAEVSIPPNLMVGTSDALFDYIAAELGKFVAQENQPPARQRELGFTFSFPVMQTSIASGNLIKWTKGFSIDDAVGQDIVAELTEAIQRQGLDMHVTALVNDTVGTLAGGRYENNNVIAAIILGTGTNAAYVERAQAIPKWHGPLPNSGEMVINMEWGNFRSSHLPLTEYDYALDAESLNPGEQIFEKIISGMYLGDIVRRVLCKMAEEAFFFGDDVPPKLRVPFMLRTPDMSAMHHDSSADLNVVGSKLKNIFEISDTSLQVRKVVVEICNIVATRGARLSAAGILGILKKLGKDTMSDGEGQKSVIAMDGGLYEHYTEYSKCLENTLKELVGEDVSESIIIEHSNDGSGIGAALLAASHSQVDVSRVPSRQSHCSLAYCVKGMRNIYVFMRGQRESH 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00265 1128 Gene3D - 842 1076 - -
Cca11g00265 1128 MobiDBLite consensus disorder prediction 594 612 - -
Cca11g00265 1128 PANTHER NUCLEAR POLY(A) POLYMERASE 4 3 580 - -
Cca11g00265 1128 SUPERFAMILY Nucleotidyltransferase 15 208 IPR043519 -
Cca11g00265 1128 SUPERFAMILY Actin-like ATPase domain 668 843 IPR043129 -
Cca11g00265 1128 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Cca11g00265 1128 PRINTS Hexokinase family signature 703 719 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 1073 1089 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 913 935 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 773 798 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 825 841 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 996 1018 - -
Cca11g00265 1128 PRINTS Hexokinase family signature 848 862 - -
Cca11g00265 1128 CDD NBD_sugar-kinase_HSP70_actin 704 862 - -
Cca11g00265 1128 MobiDBLite consensus disorder prediction 521 562 - -
Cca11g00265 1128 Gene3D - 695 1087 - -
Cca11g00265 1128 Pfam Hexokinase 695 841 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cca11g00265 1128 PANTHER POLY A POLYMERASE 3 580 - -
Cca11g00265 1128 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Cca11g00265 1128 Pfam Poly(A) polymerase predicted RNA binding domain 361 421 IPR007010 GO:0003723|GO:0043631
Cca11g00265 1128 CDD NT_PAP_TUTase 54 172 - -
Cca11g00265 1128 Pfam Hexokinase 848 1088 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cca11g00265 1128 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g00265 1128 Gene3D - 15 357 - -
Cca11g00265 1128 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Cca11g00265 1128 ProSiteProfiles Hexokinase domain profile. 626 1088 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cca11g00265 1128 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Cca11g00265 1128 SUPERFAMILY Actin-like ATPase domain 846 1092 IPR043129 -
Cca11g00265 1128 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cca11g00265 1128 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Cca11g00265 1128 MobiDBLite consensus disorder prediction 577 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00265 Cca-Chr11 3263868 3284088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00265 K14376 - gmx:100783237 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00265 11 3263868 3284088 Cca11g00265 11 3263868 3284088 ECH