Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00261 ATGGCCTCCTACAGGCCCTTCCCTCCTCCGCCATCGAGTCAAATTCAAAACCCTATCGCAGGTGCGAATCATCAGTACAATAATCAAAATTGGGGTGCTTATGGAGATCCCTCCACTTCTTCATTCCCCCCAATCCCTCCAAATTCCAATTACCAACACCAACATCACCATCCTCCGCCGCCGCCACCTCCTCCCATGTATTATCCCTCCAACAATCAGTACAACAACCAGccccctcctccgccgcctcctcccttgtcgccgccgcctccaccacccccagtttcgccccctcctcccccGGCAACTCAGAACAACGAAGAGCGGCGCTTCAAGGAGCCTTCCACGTCTGGGCGGCGTGAATACGAGCATTCCAATCATGGCATTGCTCACAAACAGCACAAGCATCAGCAGCAGCCTCCTTTGCCGGCGAAGAAGATGAATGGGCCTCCCGGTCGGCATGAGACCGACGAAGAGAAGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAGAGGCAAGAGGAAAAGCTTAGGCAGCAGCTCAAGGAGTCCCAGAACACTGTTCTTCAGAAGACTCACTTGTTGTCTTCTGGGAAGGGCCATGGTATGGTTGCCGGCTCTCGAATGGGAGAAAGGAGATCTACTCCCTTATTGAGTGCTGAGAGGGTTGAAAATAGGCTCAAGAAGCCCACAACATTTTTGTGTAAGCTCAAATTCCGAAATGAACTTCCAGATCCAAGTGCTCAACCTAAGCTTATGTCCTTCAAGAAAGATAAAGATCAATATGCAAAATATACGATCACATCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTACAATCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATGAAGATTTGTTGCGAGATGATGAAGCTGCCACTCCTATAAAGAAAGATGGCATTAAAAGGAAAGAGAGGCCTACTGATAAAGGTGTAGCATGGCTTGTCAAAACCCAATATATATCTCCTCTAAGCATGGAATCAACAAAGCAGTCTTTAACTGAGAAACAAGCCAAGGAGCTGAGAGAGATGAAGGGTGGCCGCAGTATTCTGGACAATCTTAACAATAGTGAAAGACAAATCAGGGAAATTGAAGCATCGTTTGAAGCAGCTAAGTCTGATCCTGTCCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCATTGCTGCCTGATTTTGATAGGTATGATGATCAGTATGTTGTTGCTGCATTTGATAATGCTCCCACAGCTGATTCAGAAATGTATACTAAGTTGGACAAATCTGTTCGTGATGCCTTTGAATCAAAGGCACTTCTGAAAAGCTATGCTGCAACTACTTCGGATCCTGATAATCTTGATAAGTTTTTGGCATATATGGCCCCAGCACCAGGAGAGCTGTCGAAGGATATATATGATGAAAATGAAGACGTCTCATACTCTTGGATTCGCGAGTATAATTGGGATGTTCGGGGTGACGATGCAGATGACCCTACAACATTCTTAGTTTCATTTGATGAGTCAGAAGCTCGTTACTTGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCTAAAGAGGGAAGATCGGGTGATGATGTTGAGCAATGTCATGTACCTTCAAGAGTGACTGTAAGGCGGAGGTCTAGTGTTGCTGCGATTGAGGTGAAGGATTCTGGGGTTTATACAAGTTCAAAGGGCAATTCCTCAAAGAGAGGTGGTTTAGGAATGGATGATGGTCTCGAACACCGACATAGAGTTGCACCCGATCATGACAACGATCAGTATAGTGGAGCGGAAGATTACATGTCGGATTGA 1884 0.4368 MASYRPFPPPPSSQIQNPIAGANHQYNNQNWGAYGDPSTSSFPPIPPNSNYQHQHHHPPPPPPPPMYYPSNNQYNNQPPPPPPPPLSPPPPPPPVSPPPPPATQNNEERRFKEPSTSGRREYEHSNHGIAHKQHKHQQQPPLPAKKMNGPPGRHETDEEKRLRKKREFEKQRQEEKLRQQLKESQNTVLQKTHLLSSGKGHGMVAGSRMGERRSTPLLSAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMSFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEDLLRDDEAATPIKKDGIKRKERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGGRSILDNLNNSERQIREIEASFEAAKSDPVHATNKDLYPVEVMPLLPDFDRYDDQYVVAAFDNAPTADSEMYTKLDKSVRDAFESKALLKSYAATTSDPDNLDKFLAYMAPAPGELSKDIYDENEDVSYSWIREYNWDVRGDDADDPTTFLVSFDESEARYLPLPTKLVLRKKRAKEGRSGDDVEQCHVPSRVTVRRRSSVAAIEVKDSGVYTSSKGNSSKRGGLGMDDGLEHRHRVAPDHDNDQYSGAEDYMSD 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00261 627 MobiDBLite consensus disorder prediction 106 128 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 16 37 - -
Cca11g00261 627 Pfam Paf1 233 570 IPR007133 GO:0006368|GO:0016570|GO:0016593
Cca11g00261 627 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g00261 627 SUPERFAMILY Formin homology 2 domain (FH2 domain) 89 101 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 53 104 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 598 620 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 1 223 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 150 181 - -
Cca11g00261 627 MobiDBLite consensus disorder prediction 580 627 - -
Cca11g00261 627 Coils Coil 380 400 - -
Cca11g00261 627 PANTHER RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG 209 626 IPR007133 GO:0006368|GO:0016570|GO:0016593
Cca11g00261 627 PANTHER RNA POLYMERASE II ASSOCIATED FACTOR PAF1-RELATED 209 626 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00261 K15174 - gmx:100800148 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00261 11 3208701 3212548 Cca11g00261 11 3208701 3212548 ECH