Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00258 ATGGATGGGAATTTCACCAGAAGCATAAGCAGGAGCTTAAGCAGGTCAAGTTGGAAAATGGAAGAAGTGTTTGCAAGTGGGAGGTATTCTAGAAGGACTTCTCATGTTGATGAGGATGAGGAGGCTCTCAAATGGGCTGCCATAGAGAAACTACCAACCTATGATAGGCTACGGACAAGTATCATCCAAACCTTTGGTGAAGGTGAACAACCTGGAGTGCACAAGGAAATTGATGTTAGGAAGCTAGATGTGAATGATAGGCAACAAATCATTGACAAAATTTTCAAGGTTGCTGAAGAAGATAATGAAAAGTTCCTCAAAAAGTTCAGAAACAGAATTGACAAGGTTGGGATTAGACTTCCAACAGTAGAAGTGAGGTTCCAAAATTTGACTGTTGAGGCAGATTCCTACGTTGGCAGCAGAGCTCTGCCAACCCTTCCAAACGTTGCAATGAACATTGTTGAATCAGCTCTTGGCATATGTGGGATTAGTACTGCTAAGAGGACAAAGCTCACAATTCTTAAGAATGCCTCTGGCATTGTTAAACCATCAAGGATGGCCCTTCTATTAGGCCCCCCATCTTCAGGGAAAACGACCCTTTTGTTGGCATTGGCAGGAAAATTGGACCCCGAATTGAGGGTGAAAggagaaatcacttacaatggacataaacttaatgagtttgcgccaagaaagacttcagcatacattagccaaaacgatgttcatgttggagaaatgactgtaaaagaaacactggatttctccgctagatgccagggggttggaactcgatatgATCTATTGACTGAGCTTGCCAGAAGGGAAAAGGAAGCTGGTATATTTCCAGAGGCAGATGTTGACCTTTTCATGAAGGCCACAGCAATGGAAGGAACAGAAAGCAGTCTCATTACCGACTACACGCTCAAAatattggggcttgatatttgcaaggataccatagtgggtgatgaaatgcacagaggtgtatccggtggccaaaagaagcgtgttaccacaggagagatgattgttgggcccacaaagacactattcatggatgaaatatcaacgggtcttgatagttccacaacatttcagatagtgaagtgcttgcagcagattgtgcaccttactgaaggaactatcttaatgtcccttctccaacctgctcctgagacattcaatctctttgatgacatcatcctcatatcagagggtcaaattgtgtaccaaggtccacgtgagcacattgtcgaattctttgagtcctgtggtttccgttgtcctgaaagaaagggaaccgctgatttcttacaagaggttacttcaaggaaggaccaagagcaatattgggcagacaaaaacagaccataccgttatgttacagtgacagagtttgcaaacaagttcaagcgattccatgttggaataaggcttgagaacgagttatctgtcccatttgacaagtcaagtgcacataaagcagctcttgtatatagtaaaaggtctgtgcccacaatggaccttttcaaagcatgttgggacaaggagtggttactgatcaagaggaactctttcgtctacatattcaagACAGTACAAATATGCatcattgccatcatagccgcaacagtgttcttgaggactgaaatgcaccgaaataatgaagatgatgcttcactttacattggtgcaattttgttctctatgatcatgaacatgtttaatggttttgctgagctagcactcacaattggaaggcttcctgtgttttacaagcatagagaccatcttttccaccctgcttggacttacaccctccctaatttcttgttgcgtatccccatttctgtgtttgagtctcttgtttgggtgattgttacctactacaccataggatttgctcctgaagccagcaggttcttcaagcaactattgttagtgtttctcatccaacaaatggcagctgggatgtttagggtcatttctggagtgtgtaggacaatgattatagccaacactggtggagccctcatgctacttcttgtttttcttcttggaggtttcattcttcccaaacgtgaaattcctgactggtgggtgtgggcttattgggtgtcaccattgacatatgcttttaatgccttgtctgtgaatgaaATGTTTGCTCCAAGGTGGATGCATCCACAGACTTCTTCTGATAAAACTACCACATTAGGTCTATCAGTACTAAGGAACTTTGATGTTTATGCTAATAAAGGATGGTATTGGATAGGAGCCGCTGCTCTTCTTGGTTTCACAATTTTGTACAACATTCTCTTCACCCTTGCGCTTATGTACCTGAACCCTCTTGGAAAGAAACAAGCAATTATTTCTGAGGAAGATGCAAGTGAAATGGAGACTGGAGGAGATAACAATGAAGAACCTAGACTTGTAAGGCCCCCACAGTCCAATGGAGATTCAATGCTTCGATCATTATCTACTGCTGATGGAAATAATGCAAGAGAAGTGGCAATGCAGCGAATGAGTAGCCAAGCTAATCCCACTGGATTAAGAAAAGCTGACTCAGCACATGATTCAGCTACTGGAGTTGCCCCTaaaagaggaatgattctaccttttcaaccacttgcaatgtcatttgacactgttaattactacgttgacatgcctgcagaaatgaaagaacaaggagtgacagaagataggctacaactgcttaggggagtaactagttcctttaggcctggagtcctaactgcactaatgggagttagtggagctggaaagacaactttaatggatgttttggcaggaagaaagaccggtggttacattgaaggagatattagaatctctgggttccccaagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattcaccccaagttactattcgagaatctttgctttactctgccttccttcggttgccaaaagaagttaccaaggaggaaaaaatacaatttgtggaccaagtgatggatttggtagagctagatagtctcaaggatgctatagtagggcttccaggaattacagggttgtcaaccgaacaaagaaagaggctaaccatcgcggttgagcttgttgctaatccttcaatcattttcatggatgaacccacttcaggtctagatgcaagagcagcagctattgttatgagaactgtgagaaacactgtggacactggaagaacagttgtctgcacaattcaccaacctagcattgatatctttgaagcctttgatgagcttttgttgatgaaaagaggagggcaagtgatttactcaggaccattaggacggaattcccacaagattatagaatactttgagtcaattccaggggtcccaaaaattaaagagatgtacaacccagctacatggatgcttgaagtgagttctgtagcagctgaagttaggcttggaatggactttgctgaatactacaagtcatcatctttgtttcagcgaaacaaagctcttgttaaggagttaagcacacccccacctggagctactgatttgtatttccccaccaagtactctcaatccacattgggacaattcaaatcatgtttttggaagcagtggctaacatattggaggagtccagattataatcttgttagatattttttcaccttggcttgtgctctcatgatagggacagtattttggaaagttggcaaacataaggagagctcaaccgacctgataatggttataggagcaatgtatgctgctgtcatttttgttggaattaacaactgccaaactgttcaaccaattgtagctgtagaaagaacagtgttttatcgagaaagagctgctggaatgtatgctcctttgccttatgccatcgcacaggtatttgctgaaataccatatgtgtttttccaaactgtatactactcactactagtgtacgctatggtgagctttgaatggaaagtggaaaagttcttttggttcttctttgtcagcttcttctctttcctgtacttcacatattatggaatgatgactgtttctatcacaccaaaccaccaagtagcatcaatctttgcagcagctttctatggactctttaatctcttctctggattctttatcccaagaccgaaaattcctaaatggtgggtatggtactattggatttgtccagtggcatggacagtgtatggattaattgtctctcaatatagagatatagatgaccctctttatgtgcctgggagtactcaaaatttcactctcaaaggatatattgaagaccactacgggtttaaaccagacttcatgggtccagttgctgcagttttggtagctttcactgtcttctttgcctttgtattttccttctgcatcaaagtactaaacttccaaaCAAGATAA 4449 0.1189 MDGNFTRSISRSLSRSSWKMEEVFASGRYSRRTSHVDEDEEALKWAAIEKLPTYDRLRTSIIQTFGEGEQPGVHKEIDVRKLDVNDRQQIIDKIFKVAEEDNEKFLKKFRNRIDKVGIRLPTVEVRFQNLTVEADSYVGSRALPTLPNVAMNIVESALGICGISTAKRTKLTILKNASGIVKPSRMALLLGPPSSGKTTLLLALAGKLDPELRVKGEITYNGHKLNEFAPRKTSAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDLLTELARREKEAGIFPEADVDLFMKATAMEGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEGTILMSLLQPAPETFNLFDDIILISEGQIVYQGPREHIVEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWADKNRPYRYVTVTEFANKFKRFHVGIRLENELSVPFDKSSAHKAALVYSKRSVPTMDLFKACWDKEWLLIKRNSFVYIFKTVQICIIAIIAATVFLRTEMHRNNEDDASLYIGAILFSMIMNMFNGFAELALTIGRLPVFYKHRDHLFHPAWTYTLPNFLLRIPISVFESLVWVIVTYYTIGFAPEASRFFKQLLLVFLIQQMAAGMFRVISGVCRTMIIANTGGALMLLLVFLLGGFILPKREIPDWWVWAYWVSPLTYAFNALSVNEMFAPRWMHPQTSSDKTTTLGLSVLRNFDVYANKGWYWIGAAALLGFTILYNILFTLALMYLNPLGKKQAIISEEDASEMETGGDNNEEPRLVRPPQSNGDSMLRSLSTADGNNAREVAMQRMSSQANPTGLRKADSAHDSATGVAPKRGMILPFQPLAMSFDTVNYYVDMPAEMKEQGVTEDRLQLLRGVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKNQETFARVSGYCEQTDIHSPQVTIRESLLYSAFLRLPKEVTKEEKIQFVDQVMDLVELDSLKDAIVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFESIPGVPKIKEMYNPATWMLEVSSVAAEVRLGMDFAEYYKSSSLFQRNKALVKELSTPPPGATDLYFPTKYSQSTLGQFKSCFWKQWLTYWRSPDYNLVRYFFTLACALMIGTVFWKVGKHKESSTDLIMVIGAMYAAVIFVGINNCQTVQPIVAVERTVFYRERAAGMYAPLPYAIAQVFAEIPYVFFQTVYYSLLVYAMVSFEWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDIDDPLYVPGSTQNFTLKGYIEDHYGFKPDFMGPVAAVLVAFTVFFAFVFSFCIKVLNFQTR 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00258 1482 CDD ABCG_PDR_domain1 167 413 IPR034001 -
Cca11g00258 1482 SMART AAA_5 183 415 IPR003593 -
Cca11g00258 1482 SMART AAA_5 917 1109 IPR003593 -
Cca11g00258 1482 Pfam ABC-2 type transporter 389 442 IPR043926 GO:0140359
Cca11g00258 1482 Pfam ABC-2 type transporter 1089 1149 IPR043926 GO:0140359
Cca11g00258 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 158 431 IPR003439 GO:0005524
Cca11g00258 1482 CDD ABCG_PDR_domain2 877 1115 IPR034003 -
Cca11g00258 1482 Pfam ABC transporter 908 1060 IPR003439 GO:0005524
Cca11g00258 1482 Pfam ABC transporter 174 356 IPR003439 GO:0005524
Cca11g00258 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 880 1132 IPR003439 GO:0005524
Cca11g00258 1482 Gene3D - 894 1127 IPR027417 -
Cca11g00258 1482 MobiDBLite consensus disorder prediction 796 828 - -
Cca11g00258 1482 Pfam ABC-transporter N-terminal 89 149 IPR029481 -
Cca11g00258 1482 Gene3D - 161 473 IPR027417 -
Cca11g00258 1482 Pfam ABC-2 type transporter 510 721 IPR013525 GO:0016020|GO:0140359
Cca11g00258 1482 Pfam ABC-2 type transporter 1206 1419 IPR013525 GO:0016020|GO:0140359
Cca11g00258 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1117 IPR027417 -
Cca11g00258 1482 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 9 1482 - -
Cca11g00258 1482 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1482 - -
Cca11g00258 1482 MobiDBLite consensus disorder prediction 840 863 - -
Cca11g00258 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 431 IPR027417 -
Cca11g00258 1482 Pfam Plant PDR ABC transporter associated 727 792 IPR013581 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00258 Cca-Chr11 3138178 3148316 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00258 K08711 - gmx:100798588 2743.38