Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00239 ATGTCTCTCCCTCCACACGATGCTTGGATTCACACTTCCAACAACTTCCTCCCCAGATGGAAATCCCTTTCCCTCTCTCACCAGTCAACGATCCCAATTTCTATATCAAGAGTTAACCAAGTTGACGCAGCAAGACTGGACGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTTTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCGGAGCTTGATGCTTTCCTTGAGTTCCTTATTTGGCGGTTCTCAATTTGGGTGGATAAGCCAACCCCTGGCATTGCTCTCATGAACCTGAGGTACAGAAATGAGCGTGCGGTAGAGTCAAGAGATAAAGTCAGAACAGGCCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCCTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCACGGCGTTTATGGACCTTGATACAACGGATAGAAGGAATTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGGAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGAGCTGTTAGCTTTGAATATATGAACAGGCAATTAGTTTGGAATGAATTCTCGGAAATGTTATTATTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTCCTACGACCTTTTTCTAAAGATAAATCATCAAGTTCAGCCGAGGATGGCACAGCATGTCCCATTTGCCAGGCTACTCCAACCATTCCTTTTGTTGCTCTACCTTGTCAGCACAGATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATGGTGGTGTCCTCACAGAATGA 990 0.4414 MSLPPHDAWIHTSNNFLPRWKSLSLSHQSTIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRNERAVESRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWTLIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSAEDGTACPICQATPTIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVLTE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00239 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 325 IPR013083 -
Cca11g00239 329 Pfam Zinc finger, C3HC4 type (RING finger) 273 313 IPR018957 GO:0046872
Cca11g00239 329 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Cca11g00239 329 CDD RING-HC_PEX2 272 314 - -
Cca11g00239 329 Pfam Pex2 / Pex12 amino terminal region 47 251 IPR006845 -
Cca11g00239 329 SUPERFAMILY RING/U-box 267 319 - -
Cca11g00239 329 SMART ring_2 273 313 IPR001841 -
Cca11g00239 329 PANTHER - 2 328 - -
Cca11g00239 329 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00239 K06664 - gmx:100805856 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00239 11 2891995 2897009 Cca11g00239 11 2891995 2897009 ECH