Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00231 ATGAGGGGAAGGCAGCGAGTAGCATCCAGAGAACAGATGCTTGGGCATGATAAAGATGAAAATTTAGCTTCAGTGCGCCTACCGAATGTCAAACCTTCTTGGCAGCGCTCTTTGCGGCATGTAGCAGTGGCTTCTCTTTCTTCATTCTTGTATGGATACCATATTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCTATAGATCTTGGCTTTAGTGGAAATACAATGGCTGAAGGTCTTGTAGTAAGTATATGTTTAGGAGGTGCTTTTGTTGGATCTATGTTTAGTGGATGGATTGCAGATGGTGTTGGACGCAAAAGAAGTTTCCAGTTGTGCGCATTACCGATGATCATTGGGGCTGGAATGAGTGCAACGTCAAAATCCCTGTGGGGCATGCTTTTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGCCCACCTGTTGTAGCTCTTTATGTGGCTGAGGTCTCACCTCCAGCTGTGCGGGGTGCTTTTGGGGGCCTCACTCAAATTGCAACGTGCCTTGGACTCATGGGTTCTCTCTTTATTGGAATCCCAGCCAAGGAAATAGTGGGTTGGTATGGAATGCACTTATATTTCTTTGATTTTGTTCAGAGCGGAAGAACCATTGAAGCTGAAGCTGAATTTGAGAAGCTCTTGGGAGGAGTACATGTGAAACCTGCAATGACTGAACTGTCAAAGTCTGACAGAGGTGATGGGACTGATTCAGTAAAACTTTCAGAATTAATCTGTGGCCGCCATTTCAGAGTGTTGTTCATTGGATCTACGCTTTTTGCGTTGCAGCAGCTATCTGGCATAAATGCTGTTTTCTATTTCTCTTCAACTGTCTTTGAAAGTTTTGGTGTACCATCTGATATTGCAAACACATGTGTGGGAATTTGCAATTTATTGGGGTCAATTATTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCCTGGGTAGCTTTTTGGGCATGGGGTTATCAATGGGTTTACAAGTCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGAGCAATGTATCTATCTGTTGGTGGGATGTTACTGTTTGTGCTGTCATTTGCTCTTGGTGCTGGTCCAGTTCCTTGTCTCATCATTTCTGAAATACTACCTGGCAATATCAGAGCGAAGGCAATGGCAATTTGCCTGGCTGTGCATTGGGTGATAAACTTCTTCGTGGGTCTATTTTTTTTGCGCATGCTGGAGATAATTGGGGCACAACTCTTCCACCTAAATGAACTGAAGCAATCATATGGACAAGGAAAATCGTGCTCTGAAAGCATAACTGAAAACGCCACCGCAAAATCTAATCGAAGCCTTGAATCGAAGGATCACAACTTGCGCTTTTTTTTTTTCATCAATTTTTTCTGTTTGAATGGCGAGTGA 1419 0.4313 MRGRQRVASREQMLGHDKDENLASVRLPNVKPSWQRSLRHVAVASLSSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFVGSMFSGWIADGVGRKRSFQLCALPMIIGAGMSATSKSLWGMLLGRLFVGTGMGLGPPVVALYVAEVSPPAVRGAFGGLTQIATCLGLMGSLFIGIPAKEIVGWYGMHLYFFDFVQSGRTIEAEAEFEKLLGGVHVKPAMTELSKSDRGDGTDSVKLSELICGRHFRVLFIGSTLFALQQLSGINAVFYFSSTVFESFGVPSDIANTCVGICNLLGSIIAMILMDKLGRKVLLLGSFLGMGLSMGLQVIAASSFASGFGAMYLSVGGMLLFVLSFALGAGPVPCLIISEILPGNIRAKAMAICLAVHWVINFFVGLFFLRMLEIIGAQLFHLNELKQSYGQGKSCSESITENATAKSNRSLESKDHNLRFFFFINFFCLNGE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00231 472 Pfam Sugar (and other) transporter 42 420 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca11g00231 472 PANTHER - 5 420 IPR045263 -
Cca11g00231 472 ProSitePatterns Sugar transport proteins signature 1. 96 113 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g00231 472 PANTHER PLASTIDIC GLUCOSE TRANSPORTER 3-RELATED 5 420 - -
Cca11g00231 472 ProSitePatterns Sugar transport proteins signature 1. 310 326 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g00231 472 SUPERFAMILY MFS general substrate transporter 28 419 IPR036259 -
Cca11g00231 472 CDD MFS_GLUT_like 43 418 - -
Cca11g00231 472 Gene3D MFS general substrate transporter like domains 34 423 IPR036259 -
Cca11g00231 472 PRINTS Sugar transporter signature 378 390 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00231 472 PRINTS Sugar transporter signature 48 58 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00231 472 PRINTS Sugar transporter signature 133 152 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00231 472 PRINTS Sugar transporter signature 269 279 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00231 472 PRINTS Sugar transporter signature 355 376 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00231 472 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 472 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00231 Cca-Chr11 2796520 2809942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00231 5 399 Organic Solute Cotransporters AT1G67300 61.176 3.18e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00231 - - gmx:100810660 726.472