Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00227 ATGGTTAAAGCAATGGAACAAGAACAGGAGAGTTACAGGTCCAAACTATTCAATTTTAAAGGAATATTTGAGAATGCAGGGAGGCACACAAAAAGTTTGAGTGTTGAGAGTGCCACCACATTGGATCCTTCTCCTACCGAGGAAGAAGATCCAGTGTCATCAAGAAGTGTAGGATCAAAGCCTCTAAATGATCTTGATAAGGCTCCTAAGCCAAAGGTAACCAAGGAGGAAATTGCAGCCAAAGAAGTCAAAGATAAGATAAATCAAGAAATGGAACAGATGAAGGAGAGATTTGCTAAACTTTTATTGGGGGAGGACATGTCTGGTGGAGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTCACAAATCTTGCAGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCAATGCCACCAGAAAGGAAAGCAAGATGGAGAAAAGAAATCGATTGGCTTCTATCAGTCACCGATTACATTGTTGAAATGGTTCCTGTGCAACAAAAGAACAAGGATGGCTCAACAATGGAGGTTATGACAACAAGACAACGAACCGATCTCCACATGAATATCCCAGCCTTAAGAAAGCTTGACACAATGCTTATTGATTGTCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTATCGAGAGATCAAGATGATTCAGATAGTTCAAATAGGAAAAATGAAGACAAATGGTGGTTGCCTACACCTAAGGTTCCCGTTGATGGTTTATCTGACGGAGCAAGAAGGTTTGTTCAGTATCAGAAAGATTGTGTGAACCAAGTGCTTAAAGCAGCTATGGCCATAAATGCTCAAACTCTATCAGAAATGGAGATACCAGAAAGCTATATTGAATCCCTGCCCAAGAATGGAAGATCAAGTCTAGGGGACTTGATCTACAGGAGCATTACAGATGAATTTTTCGATCCTGATCAGCTCCTAGCAGCGATGGACATGTCATCAGAACACAAAATCGTAGATCTCAAGGACAGAATTGAGGCATCGATTGTGATTTGGAGGCGGAAGATGAACCAAAAAGATTGCAAATCATCTTGGGGTTCTGCTGTGAGTATGGAGAAAAGAGAACTCTTTGAAGAGAGGGCAGAAACCATTCTACTTCTCCTAAAGCATCGTTTTCCAGGAATCCCCCAATCTGCATTGGATATAAGCAAAATCCAATTCAACCGGGATGTGGGGCAAGCTGTTCTTGAAAGTTATTCAAGAATATTGGAAAGTTTGGCCTTCACAGTGCTGTCAAGAATAGATGATGTACTCCATGCAGATTCCGTCGCTCAAAATCCACAAGGAAGAAGGAGCGTCTCGAGAAACTCAATTCCCAAGCCAGATAAGTCTCCAACTCCTAAAGAAGAGTCAGAAAAAGTTGGCGCAGAAACAATGACACTATCAGATTTCATGGGATGGAGCAATGATCCAGGTGACTCAGACAAGAAAGACTCAGATGACTCATACAAAGACATTGATAATGCAAAGCCTCAAAAACTTCCAAACGTAGTGACCGACAAGAAGACGTCCTACCTTGAGACATTGGGGGGTATGAGAAGTCCAACATCACGCCATTAG 1599 0.4165 MVKAMEQEQESYRSKLFNFKGIFENAGRHTKSLSVESATTLDPSPTEEEDPVSSRSVGSKPLNDLDKAPKPKVTKEEIAAKEVKDKINQEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDYIVEMVPVQQKNKDGSTMEVMTTRQRTDLHMNIPALRKLDTMLIDCLDNFKDQNEFYYVSRDQDDSDSSNRKNEDKWWLPTPKVPVDGLSDGARRFVQYQKDCVNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRSSLGDLIYRSITDEFFDPDQLLAAMDMSSEHKIVDLKDRIEASIVIWRRKMNQKDCKSSWGSAVSMEKRELFEERAETILLLLKHRFPGIPQSALDISKIQFNRDVGQAVLESYSRILESLAFTVLSRIDDVLHADSVAQNPQGRRSVSRNSIPKPDKSPTPKEESEKVGAETMTLSDFMGWSNDPGDSDKKDSDDSYKDIDNAKPQKLPNVVTDKKTSYLETLGGMRSPTSRH 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00227 532 MobiDBLite consensus disorder prediction 438 454 - -
Cca11g00227 532 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 89 532 IPR038937 GO:0005085
Cca11g00227 532 MobiDBLite consensus disorder prediction 30 74 - -
Cca11g00227 532 MobiDBLite consensus disorder prediction 455 469 - -
Cca11g00227 532 Gene3D PRONE domain, subdomain 1 95 435 - -
Cca11g00227 532 MobiDBLite consensus disorder prediction 30 60 - -
Cca11g00227 532 MobiDBLite consensus disorder prediction 510 532 - -
Cca11g00227 532 Coils Coil 73 97 - -
Cca11g00227 532 MobiDBLite consensus disorder prediction 483 501 - -
Cca11g00227 532 ProSiteProfiles PRONE domain profile. 81 444 IPR005512 GO:0005085
Cca11g00227 532 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 89 438 IPR005512 GO:0005085
Cca11g00227 532 Gene3D PRONE domain, subdomain 2 284 400 - -
Cca11g00227 532 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 89 532 - -
Cca11g00227 532 MobiDBLite consensus disorder prediction 435 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00227 Cca-Chr11 2753661 2757135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00227 - - gmx:100777496 872.463