Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00226 ATGGGATCGATCGGGGTGCTCCTGGTGGGGAGGGTCTTCCCCTACCTCGAGCAAGAGCTCGACAAGCGCTACAAGCTGTTCCGCTTATGGGACTACCCTCAGAAGGCGCAGCTTCTCAGTCAGCACGCCGCGTCCATCCGCGCGGTGGTCGGACACGCCGGCGCCGGCGCCGACGCCGACCTCATCGACGAGCTGCCGAAGCTGGAGATCGTCTCGAGCTTCAGCGTCGGAGTGGACATGATTGACCTGGAAAAGTGCAAGGCCAAGGGGATTCGCGTGACCAACACGCCGGACGTGCTCACCGACGAGGTCGCCGACCTCGCCATCGGCTTGACGCTCGCGCTCCTCCGCCGGATCTGCGAGTGCGACCGCTACGTCAGAAGCGGCAAGTGGAAGAAAGGTGACTACAAGTTGACCACTAAGTTCTCTGGGAAAACTGTTGGCATTGTTGGGCTAGGGAGAATTGGGCAAGCAATTGCCAAGAGAGCTGAAGGATTTAACTGTTCAATATGCTACTACTCTAGAACTGAAAAACGCGACTCAAATTACAAGTACTACCCAAGTGTTGTTGAATTAGCATCTAACTGCGACATACTGGTGGTTGCTTGCCCACTAACGGAGGAAACTCATCACATCATCAACAGGGAGGTGATCAATGCACTTGGTCCCAAGGGTTTTCTTATTAACATCGGACGAGGTAAGCACGTTGACGAGGCTGAGTTGGTTTCAGCACTGCAAGAAGGTCGTTTGGGTGGGGCTGGGTTAGATGTGTTTGAAGATGAGCCTGCTGTTCCCGAAGAGCTATTTGGCCTTGAAAATGTTGTCTTGTTGCCTCATGTTGGAAGTGCCACTCTAGAAACTCGAACTGACATGGCTGACCTTGTCCTCGGAAACCTCGAAGCTCATTTCCTAGGAAAGCCACTGTTAACTCCCTTGGTTTAA 942 0.5372 MGSIGVLLVGRVFPYLEQELDKRYKLFRLWDYPQKAQLLSQHAASIRAVVGHAGAGADADLIDELPKLEIVSSFSVGVDMIDLEKCKAKGIRVTNTPDVLTDEVADLAIGLTLALLRRICECDRYVRSGKWKKGDYKLTTKFSGKTVGIVGLGRIGQAIAKRAEGFNCSICYYSRTEKRDSNYKYYPSVVELASNCDILVVACPLTEETHHIINREVINALGPKGFLINIGRGKHVDEAELVSALQEGRLGGAGLDVFEDEPAVPEELFGLENVVLLPHVGSATLETRTDMADLVLGNLEAHFLGKPLLTPLV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00226 313 CDD HPPR 4 303 - -
Cca11g00226 313 Gene3D - 101 284 - -
Cca11g00226 313 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 6 135 - -
Cca11g00226 313 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 IPR029752 -
Cca11g00226 313 Gene3D - 17 307 - -
Cca11g00226 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 282 IPR036291 -
Cca11g00226 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 IPR006140 GO:0051287
Cca11g00226 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 310 IPR006139 GO:0016616|GO:0051287
Cca11g00226 313 PANTHER D-GLYCERATE DEHYDROGENASE/HYDROXYPYRUVATE REDUCTASE 1 313 - -
Cca11g00226 313 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00226 Cca-Chr11 2733806 2736634 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00226 - K18606 gmx:100779623 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00226 11 2733806 2736634 Cca11g00226 11 2733806 2736634 ECH