Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00224 ATGGCATCTCGCCGCCGCATGTTATTGAAGGTCATAATCCTCGGAGATAGCGGGGTTGGTAAAACGTCACTGATGAATCAGTATGTGAACCGTAAATTTAGTAATCAGTATAAGGCAACCATCGGTGCAGATTTTCTTACCAAGGAAGTTCAATTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCCGACTGCTGTGTTCTTGTTTATGATGTAAATGTCATGAAATCCTTTGACAACCTTAACCACTGGCGAGAAGAATTTCTTATTCAGGCCAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATGTTGATGGTGGAAATAGCAGAGTTATTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGCATAGCGAAAAATGCACTCAAGAATGAACCTGAAGAAGAAATGTACCTGCCTGACACAATTGATGTTGGTGGTGGTGGACGACAGCAGAGATCTACTGGCTGTGAATGTTGA 576 0.4167 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00224 191 PANTHER RAB FAMILY 1 191 - -
Cca11g00224 191 ProSiteProfiles small GTPase Ras family profile. 3 191 IPR001806 GO:0003924|GO:0005525
Cca11g00224 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 170 IPR027417 -
Cca11g00224 191 ProSiteProfiles small GTPase Rab1 family profile. 4 191 - -
Cca11g00224 191 PANTHER RAS-RELATED PROTEIN RAB7 1 191 - -
Cca11g00224 191 CDD Rab7 9 166 - -
Cca11g00224 191 SMART rab_sub_5 9 163 - -
Cca11g00224 191 PRINTS Transforming protein P21 ras signature 9 30 - -
Cca11g00224 191 PRINTS Transforming protein P21 ras signature 32 48 - -
Cca11g00224 191 PRINTS Transforming protein P21 ras signature 100 113 - -
Cca11g00224 191 PRINTS Transforming protein P21 ras signature 138 160 - -
Cca11g00224 191 SMART ras_sub_4 6 163 - -
Cca11g00224 191 Pfam Ras family 65 161 IPR001806 GO:0003924|GO:0005525
Cca11g00224 191 Gene3D - 1 174 IPR027417 -
Cca11g00224 191 SMART rho_sub_3 11 163 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00224 Cca-Chr11 2725183 2728685 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00224 K07897 - gmx:100305824 383.259