Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00222 ATGAACATGCCGAAGCCGAACCAGGTCACGGTGAGAGACCTCGTCGAGGAAGCCAAGAAACGGATCGTCATCCTCGTCGTATGCGTCGTCGGACTCTCGTATATCATGTCCTTGACAAGCTCCTCAGTCTGGGTCAATTTGCCAGCTGCAGCCTCCTTAATTATTATTCTCCGCTATTTATCACTAGATTTTGAGATGAAGAGAAAAGCTGCAGCATACAACAATAAACCAGGCTCCACCAGTCTCCAGTCTTCAAAGAAGCCTATTGAAAATCCTAAAGTTATTGCAAAGTTTGAGTGGAGAACAAAAGTGAATTCTCCTGTTGTTGAGGATGCAATTGATCACTTCACGAGACATTTAATTTCCGAGTGGGTGACAGATCTTTGGTATTCTCGCTTAACTCCAGACAAAGAGGGCCCTGAGGAGTTAGTGCAAATAATTAATGGTGTTCTTGGGGAAATTTCTGGACGCATGAGAAACATCAATTTGATAGATTTTTTAATAAGGGATCTTATTCATCTCATTTGCACACATTTGGAGCTGTTTCGTGCTGCCCACTCAAAGATTGAGAAACAACATACAGGTTCATTAACAATTGAAAGTCGAGACATGGAACTAAAAGTTGTATTGGCTGCTGAGAACAAATTGCATCCTGCTTTATTTTCTGCTGAAGCTGAGCATAAGGTTTTGCAGCATCTGATGACTGGTCTTATGCATGTTACTTTCAAGTCTGAGGATTTGCAGTGTTCTTTCTTTCGATATGCCGTCAGGGAGCTTCTTGCATGTGCTGTAATACGACCTGTAATAAACTTGGCAAATCCAAGGTTTATTAATGAAAGAATTGAATCCGTGGTAATTAACAAGACCAAGGTTAGCAATGGGGTTGCCGCAGCTCAAGAGGCATCTCACAATAAAGCAGATGAGTTACAGACTCCATCTGACTATTTCTCCAAGAGTTCAGATCCTTCTGTTACTGGTGTCGAGCTTGTGCAGCTAAGAAATGGTCAACCCAGAAATGTGGAGTTGTCTGCACAAAATAATGCCCATGGTAATATTGCTAAAGATCCGTTGCTTTCAGTTGATGCTCGATCTTCCCGGACATGGAACTCAATGCCTGCAAACTCCCAAACTAATGATGACCAGGGTATTCAACGAAATCGCTCAGGAGGAGAGTGGGGAGATATTTTAGATGTCATCTCTCGCCGAAAGACCCAAGCTCTTGCTCCAGAACATTTTGAGAACGTGTGGACTAAAGGGAAAAATTACAAGAAAAAGGATGGTGAGAACCAGCCAAATGAGCATCTTTCGCAGCCTCCTGTTGTAGGAAAACTGCCAAAGGTAGATCATATAAATGCAATATCTGGACCCATAGAAAGAGATACTAACTCAAAGCTTATTCCCTCCAAGGGAGGCCAAATTAATTCTGGGCTAAGCAGTCAACTCTCTGTTGAAAATACATCTATTCATGCAGACAAGAATGGATCAACTTCAGTTACCTCATATAAAGATGCTGAGCACAGCCACATTTATGGGCAGATGAGTGATTCAGAGAGCAGTACTTCTTATACTTCTGAAGATGATGAAAGTAGTTGTGTCACTGGTCTTGATTCCCCTGTCACTAAGGTTTGGGATGGAAGAAGTAATAGAAAGCAGGCAGTTTCTTATGTTCATCACCCACTTGAAAATTTTGACAATCACAGTACAAAGAAAAGGAATAAGAGCCATTCTCGCTATCCAAGATTATCCAGAGTTCATTCTGGCAGTAAAAGGTCTTGGCCAGGTGGTCATAAAATACAAACGTGGCAGGAAGTTGAGAGAACAAGTTTTTTATCTGGAGATGGTCAAGACATACTTAAATCTTCAAAGTCGCATATAAATTCTGAGGAGTCCAGTGATGATGCTGATATGGAAAGTTTGGGTAGACTATATAGTGGAGCAGCTGCCTCCTCTTCCCCATACTCTAATTCTAAATCAGAATCTTGTAGTTTGTCTGTTAATCCCCTAAAAAGTTCCTCTGTCGTAGATTCTTTTTACAAGTTGAGATGTGAGGTCTTAGGTGCAAATATTGTGAAGAGTGGCTCAAAAACCTTTGCTGTTTACTCCATATCCGTTACAGATGTAAATAATAACAGTTGGTCAATTAAAAGAAGGTTTCGTCATTTTGAAGAGCTACATCGACGCCTGAAAGAGTTTCCCGAGTATAATCTTCATTTGCCACCAAAACATTTTCTTTCAACTGGTTTAGATGTACCAGTCATTCAAGAGCGGTGCGAATTACTGGATAAATATTTGAAGAAACTTATGCAACTACCAACTGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGCGTGGATTCTCAGACATACATATTCTCAAATTCTTTTTCTATCATGGAAACATTATCAGTTGGCCTTGGTGCCAAGCCATTTGAGAAGACCAAAAGTGCGTCCAACTTCTCCGCACCTGCAAGTGACCCTGTTCCCTTTCGAAAGGAAAATTGTAGTTCAGAAAGTAAAGAGGCTGTTTTGCGAGCAAGAAATAATGTTGAGGCTGATGGATTGAGGTCAAAAGTAAACAGCTTGCCTCTTTCTCTACCAAAAAAGAATACAAATGAACCTAGAAAGGCATATGAAAATTCTGGCAGCAATACAGATATTCTAGCAAGGAAGAGTGCACCTTCTCCCAATAACTTGCAGAAGACAGTGAAAGGAAGGGATATTTTAGATGAGGTTTCTGAAGTGCACCAAGATACATCTGATGCCTTTCCAACAGAGTGGGTGCCACCAAATTTGAGTGTACCCATATTGGATCTGGTGGATGTTATCTTCCAGGTTCAAGATGGTGGATGGATCAGGCGAAAGGCTTTTTGGGTTGCTAAACAAGTCTTACAACTTGGGATGGGTGATGCCTTTGATGACTGGTTGATAGAGAAAATTCAACTTCTCCGTAAAGGATCAGTGATTGCTTCTGGGGTCAAGCGAGTTGAGCAAAAACCTGATAAGCATAAGATGGAAATGGTGTTGTACTGA 3033 0.4108 MNMPKPNQVTVRDLVEEAKKRIVILVVCVVGLSYIMSLTSSSVWVNLPAAASLIIILRYLSLDFEMKRKAAAYNNKPGSTSLQSSKKPIENPKVIAKFEWRTKVNSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDKEGPEELVQIINGVLGEISGRMRNINLIDFLIRDLIHLICTHLELFRAAHSKIEKQHTGSLTIESRDMELKVVLAAENKLHPALFSAEAEHKVLQHLMTGLMHVTFKSEDLQCSFFRYAVRELLACAVIRPVINLANPRFINERIESVVINKTKVSNGVAAAQEASHNKADELQTPSDYFSKSSDPSVTGVELVQLRNGQPRNVELSAQNNAHGNIAKDPLLSVDARSSRTWNSMPANSQTNDDQGIQRNRSGGEWGDILDVISRRKTQALAPEHFENVWTKGKNYKKKDGENQPNEHLSQPPVVGKLPKVDHINAISGPIERDTNSKLIPSKGGQINSGLSSQLSVENTSIHADKNGSTSVTSYKDAEHSHIYGQMSDSESSTSYTSEDDESSCVTGLDSPVTKVWDGRSNRKQAVSYVHHPLENFDNHSTKKRNKSHSRYPRLSRVHSGSKRSWPGGHKIQTWQEVERTSFLSGDGQDILKSSKSHINSEESSDDADMESLGRLYSGAAASSSPYSNSKSESCSLSVNPLKSSSVVDSFYKLRCEVLGANIVKSGSKTFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVPVIQERCELLDKYLKKLMQLPTVSESIEVWDFLSVDSQTYIFSNSFSIMETLSVGLGAKPFEKTKSASNFSAPASDPVPFRKENCSSESKEAVLRARNNVEADGLRSKVNSLPLSLPKKNTNEPRKAYENSGSNTDILARKSAPSPNNLQKTVKGRDILDEVSEVHQDTSDAFPTEWVPPNLSVPILDLVDVIFQVQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLIEKIQLLRKGSVIASGVKRVEQKPDKHKMEMVLY 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00222 1010 Pfam PXA domain 106 283 IPR003114 -
Cca11g00222 1010 ProSiteProfiles PX domain profile. 678 790 IPR001683 GO:0035091
Cca11g00222 1010 CDD PX_SNX19_like_plant 680 784 - -
Cca11g00222 1010 PANTHER PX SERINE/THREONINE KINASE PXK 7 998 - -
Cca11g00222 1010 SMART PX_2 682 786 IPR001683 GO:0035091
Cca11g00222 1010 MobiDBLite consensus disorder prediction 458 477 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 421 442 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 511 533 - -
Cca11g00222 1010 Pfam Sorting nexin C terminal 951 999 IPR013937 -
Cca11g00222 1010 Gene3D - 678 794 IPR036871 GO:0035091
Cca11g00222 1010 MobiDBLite consensus disorder prediction 367 390 - -
Cca11g00222 1010 SMART PXA_3 110 289 IPR003114 -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 367 385 - -
Cca11g00222 1010 Pfam PX domain 709 786 IPR001683 GO:0035091
Cca11g00222 1010 SUPERFAMILY PX domain 679 787 IPR036871 GO:0035091
Cca11g00222 1010 MobiDBLite consensus disorder prediction 570 584 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 861 901 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 876 901 - -
Cca11g00222 1010 PANTHER PHOX (PX) DOMAIN-CONTAINING PROTEIN 7 998 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 557 597 - -
Cca11g00222 1010 MobiDBLite consensus disorder prediction 297 321 - -
Cca11g00222 1010 ProSiteProfiles PXA domain profile. 106 285 IPR003114 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00222 Cca-Chr11 2679019 2687266 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00222 K17925 - gmx:100790491 1713.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00222 11 2679019 2687266 Cca11g00222 11 2679019 2687266 ECH