Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00220 ATGGAAGCGAAAGATGGAACGCGAAAATTCCCAGGGTTTCCTTTCAAACCCTATTCGATTCAGATTGATTTCATGAACAGCTTGTACCAATCTCTCAATCAAGGTGGCGTCTCTATGTTGGAAAGCCCAACTGGGACTGGGAAAACCATGAGTGTGATTTGCAGTGCTTTGCAATGGGTGATTGATCGGAGGTTACTAGAGGAAGTAGCGTGTGGTGATGGTAGAGGGAATGGTGACGGTGGGGTTGGTTCGGATGACGAACCTGATTGGATGAGGGACTTTGTTGTCAACAAAGAGGAGAATAAGAAGGAAGAGAAGTCCGGGTATGTGTTTGGAAAAGCTCATaataataagaagaagaagaagaaggaggaggagGAAATTAAGGATTTTCGGGTTATGGGCGTTGGAGAGTCTACTGTTGAAAAAGGGCGAGAGAGTTTGCAAAAGAAAATTGGTGCAGTGGATATTAGTGACAAGGAGTTTTTACTAGAGGAGTATGAGAGTGAAGATGAGAAAGTACTAGGTAGTGGGGTGTCCAAGAGGAAGGCTGTTAAAAGTTCCTTTAGTTCGTCAAGtgaagatgagtctggtgaggaggaagaggaggaggaTAAGAAGTTGAAGGTTTATTTCAGTAGTCGGACTCATTCGCAGCTTTCTCAGTTTGTAAAGGAGTTGCGGAAGACGGTCTTTGCTGATGAGATGAATGTTGTGAGTTTAGGCTCCAGGAAAAATCTTTGCATTAATGAAGAAGTAGTTACACTTGGAAACTCCACACGCATAAATGAGCGATGCTTGGAACTCCAGAAGAAAAAGAAAAATGAAGCTACAAAAGTTAAGAACTTAAAAATAGGTTCAGGGGTACGCAGGACAAAGGCCTCTACTGGCTGCCCAATGCTTAGAAAACATAAAGTACAACAAGAATTTAGGAATGAGGTAACTCAGCAAGGGCCCTTGGATATTGAAGATCTTGCAAATCTTGGAAGAACCATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCGGAGAGCTGATCTTGTGGTCTTACCGTATCAATCTCTCCTGTCTAAATCATCTCGTGAAGCACTTGGTTTGAATTTGAAATCCAATATTATTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTCCACAATTACTGTATCACAGCTGGAGACTGTGCATTGCCATGTGGAGCGGTACTTTTTGAGATTCCGGAATCTTTTGGGACCTGCTAATAGGAGATATATTCAAACTCTGATGTTCCTGACACAAGCTTTTCTCCGAGTACTACTCGATGAAAAAGATGGAAATCTTATAGAGTTTTGCCGTGATATAGGTCGAGCTTCTGATGTAGAGAGTAGAGCTTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACTAAATATAGACAATATCAACCTGGTCAAACTGTTAAAGTATATAAAGGATAGTAATATCATGCACAAGGTTAGTGGTTATGGAAAAATGTTGGCTACCTTGGAGAAGATACCAGCACTCCATAAAATCGGGGAACATGATGAGGAGGGAAGCTGTGTGTCTGCTTTCCAAGCCTTAGCTGGCATATTACTATCACTGACAAACAAGGATGGTGATGGAAGGATAATAATTTCCAGGTCTAGATCAACGAGCCTCAGGAAGCAAGGAGGATATATGAAATATGTTATGCTCAGTGGAGAGAAGATTTTCTCCGAGATTGTAGGTGAAGCACATGCAGTTGTATTAGTAGGGGGAACGCTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCGTGGTTACCATCAAATCAGTTGCATTTCTTTTCATGTGGTCATATTGTCCCTCCTGATAGCATCATGCCAATTTCAGTTCTGCGTGGACCTACTGGCCGCTGCTTTGATTTCAGCTTCACCTCCAGGAGCTCACCAGATATGATGCGAGAACTGGGTCTTTTGCTATGTAATTTGGTGACTGTTGTTCCCGAAGGAATTGTAGTCTTCTTTCCTTCTTTCGATTACGAAAATAGAGTCTACGAAAATTGGGAGTCATCTGGCATCCTTGAAAGGATTTCAAAGAGGAAGCGTGTCTTTAGGGAGCCTAGAAATAACATGGATGTTGAATCTGTACTCAAGGAATATAAAGATACCATTGATACATTATCGGGTATGAATTCAGAAGTGAACCAATCATCTCATAGTGGTGCAATACTCCTTGCTGTTGTTGGTGCGAAGTTATCTGAGGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTGCCATATGCTAGCCCGTCAGACATCGAGTTGTTGGAGAGGATAAAGCACATTGAAGGTTTTCAAAATTTAAAGCTCCATGAGAATCCTAGCTTTTCTGCCAGTTATGATCTATACAGTGGAGATGTCAAAGGTGGTTTTGACATCTTAAGAAGTTGCAGTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCGGATTCCTCGAAATGGAGCTTTGCTCACCCAGTCACTAAGCTCCCCCAGTGGATAAAAGGTCGTCTTGTTTCTTCTACCACTAACTATGGAGAGGTACATAGGTTGTTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCATTAG 2757 0.4055 MEAKDGTRKFPGFPFKPYSIQIDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVIDRRLLEEVACGDGRGNGDGGVGSDDEPDWMRDFVVNKEENKKEEKSGYVFGKAHNNKKKKKKEEEEIKDFRVMGVGESTVEKGRESLQKKIGAVDISDKEFLLEEYESEDEKVLGSGVSKRKAVKSSFSSSSEDESGEEEEEEDKKLKVYFSSRTHSQLSQFVKELRKTVFADEMNVVSLGSRKNLCINEEVVTLGNSTRINERCLELQKKKKNEATKVKNLKIGSGVRRTKASTGCPMLRKHKVQQEFRNEVTQQGPLDIEDLANLGRTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSREALGLNLKSNIIIIDEAHNLADSLINMYDSTITVSQLETVHCHVERYFLRFRNLLGPANRRYIQTLMFLTQAFLRVLLDEKDGNLIEFCRDIGRASDVESRASDFTMAINDFLFELNIDNINLVKLLKYIKDSNIMHKVSGYGKMLATLEKIPALHKIGEHDEEGSCVSAFQALAGILLSLTNKDGDGRIIISRSRSTSLRKQGGYMKYVMLSGEKIFSEIVGEAHAVVLVGGTLQPIEETRERLFPWLPSNQLHFFSCGHIVPPDSIMPISVLRGPTGRCFDFSFTSRSSPDMMRELGLLLCNLVTVVPEGIVVFFPSFDYENRVYENWESSGILERISKRKRVFREPRNNMDVESVLKEYKDTIDTLSGMNSEVNQSSHSGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFQNLKLHENPSFSASYDLYSGDVKGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKWSFAHPVTKLPQWIKGRLVSSTTNYGEVHRLLHQFFKLKKTCCH 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00220 918 MobiDBLite consensus disorder prediction 186 205 - -
Cca11g00220 918 Gene3D - 14 71 IPR027417 -
Cca11g00220 918 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 429 IPR014013 GO:0005524
Cca11g00220 918 Pfam DEAD_2 212 400 IPR010614 GO:0003677|GO:0003678|GO:0005524
Cca11g00220 918 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 8 901 IPR028331 -
Cca11g00220 918 CDD SF2_C_XPD 629 868 - -
Cca11g00220 918 SMART deadxpd 9 423 IPR006554 GO:0003678|GO:0016818
Cca11g00220 918 Gene3D - 643 881 IPR027417 -
Cca11g00220 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 396 IPR027417 -
Cca11g00220 918 SMART Cxpdneu3 683 870 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cca11g00220 918 Gene3D - 184 436 IPR027417 -
Cca11g00220 918 SMART ultradead3 13 464 IPR014001 -
Cca11g00220 918 TIGRFAM rad3: DNA repair helicase (rad3) 160 899 IPR013020 GO:0003678
Cca11g00220 918 Pfam Helicase C-terminal domain 665 878 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cca11g00220 918 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 8 901 IPR045028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00220 Cca-Chr11 2670108 2675098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00220 K11273 - gmx:106794132 1506.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00220 11 2670108 2675098 Cca11g00220 11 2670108 2675098 ECH