Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00211 ATGTTTCGGTGGCTATTCAAACCCAGGTTCTATTCAAAATGCTTGTCCTACGTGAAGTTTTTGAAGTCTCGGCTAGAGATTATACAGAAGAAGAAGAAAGCAGTGCAGAAGTTTCTGAAGAGTGACCTTGCCGTGCTTCTTAGGAGTGGCTATGATTTCGAGGCATACAAAAGGGCTGAATGGTTTTTGTTAGAGCAAAATATGTTATCCTGCTATAAACTCATTGAGAAGTTTGTTGGATGCATATCAGATCATGTTGAAGAGCTAACCAAGGAGAAGGATTGCCCTGATGAATGCAAGGAAGCTGTGCCATCATTGGTGTATGCTGCAGCAAGATTTGCTGATCTGCCAGAACTGCGTGACCTCAGAACAATATTTACCGAGAAATTTGGGAATTCTCTTGAACCTTTCATTAATAAAGAGTTTGTTGAGAAGCTGAGGTGTGATCCCCCTTCCAGAGAAATGAAGATTAAACTGTTATATGACATAGCGCAAGAGTTCTCTATAGAGTGGGATGACAAGGCTTTGAGTCAAGGACTTCTTTATACACAGTCGTCGTTATGTGAAGAGAGGCCTAATCCTGGAGGAAACAGGAACAGCAATACATCCAAAGGAAAGGAAAGAGACACCTTACCCCTTCGAAGCAAGGAATTTAATGATGACTCATGGATACACCGAAACAGTAGTGATGATGAAACAAGTACATCACAAGAAAAGGGTAGTAGTTCAAATTCGTTGGAAAGCATATCTGAGGATGAAGTAGAAAGTAAGAGGCCAAATTCCTATTGGTTCATTCCACCCCCATACCTCAAACAAAAGACTGACAAAGGTGAAAGCAATTCAACGAAAACAACACAATCTGAGGCTCTACCAAAAAAGGAATCAAAGCATCCGAGATCAGTAAGGAAAGACAGTGTTGCTGATTCTAAAACATCTCTAGTGAGAGGAAATTCTGTTCCTTCTGACCCCACAACTGCAGTGGAAACATCAAAAGGGCATGTACGAACAATTTCCTTGGGATCTAGAATGAGGGGTGGTGCATCGCATGTGCATCCTAATCTACCCGATTATGATGAATTGAAAGCTCGTTTTGCAGCTCTCAGACAGAAATAA 1113 0.4124 MFRWLFKPRFYSKCLSYVKFLKSRLEIIQKKKKAVQKFLKSDLAVLLRSGYDFEAYKRAEWFLLEQNMLSCYKLIEKFVGCISDHVEELTKEKDCPDECKEAVPSLVYAAARFADLPELRDLRTIFTEKFGNSLEPFINKEFVEKLRCDPPSREMKIKLLYDIAQEFSIEWDDKALSQGLLYTQSSLCEERPNPGGNRNSNTSKGKERDTLPLRSKEFNDDSWIHRNSSDDETSTSQEKGSSSNSLESISEDEVESKRPNSYWFIPPPYLKQKTDKGESNSTKTTQSEALPKKESKHPRSVRKDSVADSKTSLVRGNSVPSDPTTAVETSKGHVRTISLGSRMRGGASHVHPNLPDYDELKARFAALRQK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00211 370 Gene3D - 4 178 IPR042277 -
Cca11g00211 370 PANTHER IST1 FAMILY MEMBER 9 370 IPR005061 GO:0015031
Cca11g00211 370 MobiDBLite consensus disorder prediction 310 333 - -
Cca11g00211 370 MobiDBLite consensus disorder prediction 202 233 - -
Cca11g00211 370 MobiDBLite consensus disorder prediction 187 333 - -
Cca11g00211 370 MobiDBLite consensus disorder prediction 234 249 - -
Cca11g00211 370 MobiDBLite consensus disorder prediction 289 309 - -
Cca11g00211 370 Pfam Regulator of Vps4 activity in the MVB pathway 18 169 IPR005061 GO:0015031
Cca11g00211 370 MobiDBLite consensus disorder prediction 187 201 - -
Cca11g00211 370 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 9 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00211 Cca-Chr11 2595010 2597317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00211 - - gmx:102665874 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00211 11 2595010 2597317 Cca11g00211 11 2595010 2597317 ECH