Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00198 atgGCTAGCGCGGTTGAAGAAAACAATGTTGAGTACGATAGTGATCCGGAAGAGGCAAAGCGACCGTTAACAATGCGGAGGCGCGAAGCCAGCGATGACGAAGAAGCCGAAGGAGAAGTCACTGATAAGAGGGAAGATCGTAGGGTAGAGGTTCCTTCTGATGTGTTAGATGACGAAGGAGGTGTTGAAGACTATGATGATGGTAATGTTGTTgaagaagaagaagaagaagaagaagaagaaTTAGAAGATGAGGAAGTTGAAGAAGAGGTGTACGAGGAGAAGAGTGCAAGTGGTGGGGTTGATGAGGGTTCAGTGGTTGTGGTCAAGGAATCTGATGGTGATGGTGATGATGATGTCAGACCCCCTTTGGAAGATTCTGCTGAGGACCATTTGGAGGAGAAAAAGGAGAATGAACCATTTGCGGTGCCCACTGCTGGAGCTTTTTACATGCACGATGATCGTTTTAGGGACAATTCTGGTGCTCGTCACAGGCGGATACCTGGTGGAAGGAGACTGTGGGAGTCCAAAGATGACAGGAAATGGGGACATGATAAATTTGAGGAAATTACTTTTCATGAAAGGCGCTATGAAGAGAGGAGACCTAAGGGTAATTATCATGGCCATGCTAAGAGTCGAGGCACTGATCGGGGAGGATATGTTCGAGGAAACAGGAAAGGGTATAATGACAGCTCTAGCAATCAAAATCAGGTGCCTAAGAGTGTTGTGAGAGGGAGAGGCCCCCAAAGGTATGAACGTACCAATAAAAGCAATGGTCCATCTCCCCAAGTGCAAAATAAACAATCTGGGAAGTCTCTTGAGAAAACTTCAAATGTTAGTTCAGAGAGGACTTCCATATCTGCTTCCAACACAGAATCTGACGCTGTCCGTGCTAAAATTCAAGTGGTTGCTTCAAATTTGAATTCATCATCCCCACCATATTATCCGTCAGTCTCTTCCAACAAAGATGCACAAAAAAGGGAGGTACAAACGGGCGGCAGTAGCAGGAGCACTGGCCCTTTTGTTATGGAAGAGGGTTTTCCAGTTCAACAAAACAATGCACTGCTTCGGGGAAAGAATGTTGCTGATTCCATCAGCATGGCAAAGCTGTATATTGATGAGTCCATCCCTGCATCTGTTGGAAAACCTTTAAACAATGAGCACATGGTGCCACTGAGATCTTCTGGAGTCAATGCTTCTCAATCTCCTCATCTCAGGGCTTCTGGGACTGGGAGGGGTACAGCAATCCCCGTGCAGATGAATTATCAGCGTGCTCCCTCACATAATCAAATAAATAAAGTTTCTCCAACGCAACTGCTGGCTACTCAGACAAGTTCTGCTCCAGGACGGAATTCTACTTCTGTACAAGCTACTGTTCCGCAGTTGGGCCATAGACCTAGTAGTAGGTCTCAATCATCATCTCCTCCCAAAACATCCATGTCAATGAATTCACATGATTCTGGAGATATGCATGACGGACCAGAATCAGGTAAAGCCAAAGGTGCTTTGGTTGGGAATGGAAGGGGAGGTACCCATGGTGCTGGTATGGGCTCTTTTGTTTATGGTGGGGCACAGGCAATGGGCGCTGCTGGAAATGTGAGTGTTAGTCATGGAGATCCAAATGTCCCAACCTTTTTGCCAGTCATGCAATTTGGAGGTCAGCATCCTGGTGGTATAGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTCCCTGGAAACTCAGAAATGACATGGCTACCAGTCTTGGCTGGTACTGCAGGAGCTTTAGGGGCTACATACCCGTACCTTGCTGTTGATGGTGCATACGCTCGACAATCTGGACAAGCCACTGCAATGGATACTTCAGGCAAGGAACATAATGTTAATAAACCTAACAATGAATTGAAGCCACCGCAGAGATCTGCAAGTGATGAGTTTGGACAACGGCAGAATAAACCCCGAAGATATTCAGAGATGAATTTTGATAAAGGCCTATCTCCTGGCCCTTTGTTCTCCGGCTTCTGA 2010 0.4587 MASAVEENNVEYDSDPEEAKRPLTMRRREASDDEEAEGEVTDKREDRRVEVPSDVLDDEGGVEDYDDGNVVEEEEEEEEEELEDEEVEEEVYEEKSASGGVDEGSVVVVKESDGDGDDDVRPPLEDSAEDHLEEKKENEPFAVPTAGAFYMHDDRFRDNSGARHRRIPGGRRLWESKDDRKWGHDKFEEITFHERRYEERRPKGNYHGHAKSRGTDRGGYVRGNRKGYNDSSSNQNQVPKSVVRGRGPQRYERTNKSNGPSPQVQNKQSGKSLEKTSNVSSERTSISASNTESDAVRAKIQVVASNLNSSSPPYYPSVSSNKDAQKREVQTGGSSRSTGPFVMEEGFPVQQNNALLRGKNVADSISMAKLYIDESIPASVGKPLNNEHMVPLRSSGVNASQSPHLRASGTGRGTAIPVQMNYQRAPSHNQINKVSPTQLLATQTSSAPGRNSTSVQATVPQLGHRPSSRSQSSSPPKTSMSMNSHDSGDMHDGPESGKAKGALVGNGRGGTHGAGMGSFVYGGAQAMGAAGNVSVSHGDPNVPTFLPVMQFGGQHPGGIGVPAVGMAFPGYVPGNSEMTWLPVLAGTAGALGATYPYLAVDGAYARQSGQATAMDTSGKEHNVNKPNNELKPPQRSASDEFGQRQNKPRRYSEMNFDKGLSPGPLFSGF 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00198 669 Pfam CASC3/Barentsz eIF4AIII binding 127 210 IPR018545 GO:0003729|GO:0006397|GO:0035145
Cca11g00198 669 Coils Coil 65 95 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 611 669 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 395 414 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 124 140 - -
Cca11g00198 669 SMART Btz_2 107 210 IPR018545 GO:0003729|GO:0006397|GO:0035145
Cca11g00198 669 MobiDBLite consensus disorder prediction 1 294 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 226 242 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 252 294 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 56 92 - -
Cca11g00198 669 PANTHER PROTEIN MLN51 HOMOLOG 1 657 IPR044796 GO:0003729|GO:0006397|GO:0035145
Cca11g00198 669 MobiDBLite consensus disorder prediction 14 34 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 611 641 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 40 55 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 442 486 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 307 338 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 307 342 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 151 220 - -
Cca11g00198 669 PANTHER PROTEIN MLN51 HOMOLOG 1 657 - -
Cca11g00198 669 MobiDBLite consensus disorder prediction 442 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00198 Cca-Chr11 2450531 2455324 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00198 - - gmx:100796971 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00198 11 2450531 2455324 Cca11g00198 11 2450531 2455324 ECH