Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00196 ATGTGCACCCCATTTTCCCCATTCTATAAAATCCCAAACCCTCATATCATAGCATATCATCATTCTCCAAACCCTTTTCCTCCAACATCGCAAAGATCCTTTCTTTCTGCAAAGGTAATCGATTTCTCTACTCTCACCATGGAGTTAATTTCAGGTCTACCAGAGGACGTGGCCCGGGACTGTCTGATACGGGTGTCGTATCAAGAGTTCCCCACGGTGGCGTCGGTCTGCAGACTCTGGAAATCCCAGATTCACGCGCCGGAGTTCCACCGTCAACGCCGCACCACAGGCCACGCCCAGAACGTCATGCTCATGGTTCAAGCAAAGGTCGAACCGGGAACCGCTTCGACCAAGCGCGTGACCAACCCGGTTTACAGACTCAGCGTGTTCGAACCCCAAACGGGTAATTGGGCCGAACTGCCAGGCCCACCCGAGTTCAATTCGGGGTTACCCATGTTCTGTCAGGTAGTGGGCGTCGGGTACGATCTGGTTGTGTTGGGCGGGTTGGACCCTAATTCATGGAAAGCATCCAATTCGGTTTTTGTTTATAACTTCTTGTCGGCCAAGTGGCGCCGCGCCGCCTGCATGCCCGGCGGACCCCGCACCTTCTTCGCGTGCGCCGCCTCCGACTCCCACGCCACGGTTTTCGTCGCCGGCGGACACGACAACGAGAAGAACGCGCTGCGCTCCGCGCTTGCTTATGACGTCTCGTCGGACTGCTGGATTCCGCTGCCGGACATGGCGGCGGAGCGCGACGAGTGCCGCGGCGTCTTCCGCCGCGGCCGGTTCTTCGTCGTCGGGGGTTACCCGACGGACGCGCAGGGAAGGTTCGAGAAGAGCGCGGAGGCGTTCGATCCCGCCACGTGGCGCTGGGGAGAAGTGAAGGATGGCTTCTTGGATTGCGCCACGTGTCCGAGGACGTTCGTGGACGGTGGCGATGGCGATGGCGAGGGGGCGTACCTGTGCGTCGGGGGTGAGTTGATGGCCATGCGGAGGGACACGTGGCAGAGGATTGCGGCGGTGCCCGGGGATGTGTGCAACGTGGCGTACATTGGAGCGTTGGATGGGACACTGGTGGTGATCGGATCCAGCGGCTACGGGGAAGTCCACGTGGCTTATGCTTTCGATGCGAAGAGTTGTAACTGGAGAAAACTGGAGACACCGGAGGCCTTCAGAGGACATGTCCAAACTGGTTGCGTTTTGGAGATTTAG 1212 0.5891 MCTPFSPFYKIPNPHIIAYHHSPNPFPPTSQRSFLSAKVIDFSTLTMELISGLPEDVARDCLIRVSYQEFPTVASVCRLWKSQIHAPEFHRQRRTTGHAQNVMLMVQAKVEPGTASTKRVTNPVYRLSVFEPQTGNWAELPGPPEFNSGLPMFCQVVGVGYDLVVLGGLDPNSWKASNSVFVYNFLSAKWRRAACMPGGPRTFFACAASDSHATVFVAGGHDNEKNALRSALAYDVSSDCWIPLPDMAAERDECRGVFRRGRFFVVGGYPTDAQGRFEKSAEAFDPATWRWGEVKDGFLDCATCPRTFVDGGDGDGEGAYLCVGGELMAMRRDTWQRIAAVPGDVCNVAYIGALDGTLVVIGSSGYGEVHVAYAFDAKSCNWRKLETPEAFRGHVQTGCVLEI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00196 403 Gene3D - 89 398 IPR015915 GO:0005515
Cca11g00196 403 Pfam Kelch motif 154 197 IPR006652 GO:0005515
Cca11g00196 403 Pfam Kelch motif 215 247 IPR006652 GO:0005515
Cca11g00196 403 PANTHER OS02G0208700 PROTEIN 47 403 IPR044595 GO:0080037|GO:2000762
Cca11g00196 403 SUPERFAMILY F-box domain 46 96 IPR036047 GO:0005515
Cca11g00196 403 Pfam F-box domain 50 91 IPR001810 GO:0005515
Cca11g00196 403 SMART kelc_smart 214 261 IPR006652 GO:0005515
Cca11g00196 403 SMART kelc_smart 162 210 IPR006652 GO:0005515
Cca11g00196 403 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 47 403 - -
Cca11g00196 403 SUPERFAMILY Kelch motif 122 387 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00196 Cca-Chr11 2439034 2441151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00196 53 241 Miscellaneous Gene Families AT4G33900 25.248 2.91e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00196 - - ccaj:109808365 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00196 11 2439034 2441151 Cca11g00196 11 2439034 2441151 ECH