Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00190 ATGGGAATGTTGAGATGGACAATGTTCGCCCTAGTTTCTTTGTATCCCCTCTTCACTTGTGAAGTCTCTGCTACTTCCACACAGTTAATTTCAAACTCAACACAAGATGACATTATTAATATATGTAGTATTGTGTATTGTGGGAAAGGAACATGCCACCCTTCTTCCACTGAACCGTTGGGTTTCAGATGCGATTGTGAATCTGGTTGGAAGAAGCCTAACATTGGTTCTTTTCAATTCCCAACATGCATTTTTCCTAACTGTACCATTGATTTAAATTGTGGTAACGGATCTCCGTCACCTCCTTCTGCTCCACCTACAAATGTAGACCCTTGCTTGTTGAATATCTGCGGGGACGGAACCTGTGTGAAAGATGGGTCTGATTTTAGGTGTGAGTGCAATGAAGGCTCAGCAAATTTACTTAACGATCCAAAGTTGCTTTGCTTTAAGAAATGCACATTAGGAGGAGATTGTAATGGTCTTGGTCTAGGGTTCAGCTCACAGTCAACTGAAACTCCACAAACATCTGGGACTGCCTCTCTTCCTGCTGCAGGGTCAGGTGAAACGGTGAGTGGCATAAAGGAGGTTCATATGGTAGCTATGACAATATTAGCACTAATATTTCAAATATGTAATTAA 639 0.4147 MGMLRWTMFALVSLYPLFTCEVSATSTQLISNSTQDDIINICSIVYCGKGTCHPSSTEPLGFRCDCESGWKKPNIGSFQFPTCIFPNCTIDLNCGNGSPSPPSAPPTNVDPCLLNICGDGTCVKDGSDFRCECNEGSANLLNDPKLLCFKKCTLGGDCNGLGLGFSSQSTETPQTSGTASLPAAGSGETVSGIKEVHMVAMTILALIFQICN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00190 212 PANTHER NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 3-LIKE 11 209 - -
Cca11g00190 212 SMART egf_5 111 149 IPR000742 -
Cca11g00190 212 SMART egf_5 41 84 IPR000742 -
Cca11g00190 212 PANTHER NEUROGENIC LOCUS NOTCH-LIKE PROTEIN 11 209 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00190 - - gmx:121175315 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00190 11 2336098 2338844 Cca11g00190 11 2336098 2338844 ECH