Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00188 ATGGGTTCAGAAGTGACTCTAAAGCTTCCTGTGATCGACTTTACAAACCTCAAATTGGAAGCCAACAATCCTAATTGGGAGGAAGTAAAATCCCAAGTCCACAAGGCACTAGTAGAGTATGGTTGCTTTGAAGCAATTTTTGATAAAGTTCCTTTAGACCTTCGCAAAGCCATATTCGGTGCACTACAAGACCTCTTTGATCTCCCTCTTCAAACAAAGATACTCAATGTGTCTAAGAAGCCCTATCATGGTTATGTTGGCCAATATCCTATGGTCCCACTTTTTGAAAGCATGGGCATTGATGATGCAACTATCTATGACAAAGTAGAAAGCATGACCAACATCTTGTGGCCTGATGGAAACCAAAGTTTTAGCAAAACTATTCAATCCTTCTCTGAGCAGCTATCAGAGTTGGATCAGATCATCAGGAAGATGGTTTTGGAGAGCTTGGGAATTGAAAAGTACTTAGAGGAGCACATGAACTCAACCAATTATCTTCTCCGGGTTATGAAATACAAAGGCCCTCAAACCAGTGACACAAAGCTAGGCCTCAGCGCACACACAGACAAGAACATTGTGACCATATTGTATCAAAATCAAGTGGAGGGTTTAGAGGTGTTGACCAAAGATGGAAAATGGATAAGCTACAAGCCTTCTCCTGAGAGTTTTGTTGTCATGATTGGTGACTCTTTACATGCATGGTCAAATGGGAGGCTGCATTCACCCTTTCACCGAGTGATGATGAGTGGGAATGAAGCAAGATACTCTACAGGGCTTTTCTCTATCCCTAAAGGAGGGAGCATTATAAAAGCACCAGAGGAGTTGGTGGATGAGGAACACCCTCTTCTCTTTAAGCCTTTTGATCATGTTGAGTTCCTCAAATATTATTACACTGAAAAGGGCCAGGCAGATTCATTTGCACTGCGCACTTACTGTGGTGTTTGA 945 0.4212 MGSEVTLKLPVIDFTNLKLEANNPNWEEVKSQVHKALVEYGCFEAIFDKVPLDLRKAIFGALQDLFDLPLQTKILNVSKKPYHGYVGQYPMVPLFESMGIDDATIYDKVESMTNILWPDGNQSFSKTIQSFSEQLSELDQIIRKMVLESLGIEKYLEEHMNSTNYLLRVMKYKGPQTSDTKLGLSAHTDKNIVTILYQNQVEGLEVLTKDGKWISYKPSPESFVVMIGDSLHAWSNGRLHSPFHRVMMSGNEARYSTGLFSIPKGGSIIKAPEELVDEEHPLLFKPFDHVEFLKYYYTEKGQADSFALRTYCGV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00188 314 Pfam 2OG-Fe(II) oxygenase superfamily 159 260 IPR044861 -
Cca11g00188 314 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 87 IPR026992 -
Cca11g00188 314 Gene3D - 7 311 IPR027443 -
Cca11g00188 314 PRINTS Isopenicillin N synthase signature 187 208 - -
Cca11g00188 314 PRINTS Isopenicillin N synthase signature 223 249 - -
Cca11g00188 314 SUPERFAMILY Clavaminate synthase-like 7 301 - -
Cca11g00188 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 6 313 - -
Cca11g00188 314 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 263 IPR005123 -
Cca11g00188 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 6 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00188 Cca-Chr11 2299495 2301573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00188 7 297 Glycosyltransferase AT5G59530 24.252 1.09e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00188 - - gmx:100784444 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00188 11 2299495 2301573 Cca11g00188 11 2299495 2301573 ECH