Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00178 ATGTTATTACTATGGAAAGGCGCGAAGCAGAGAATTTGGTTCAAAACGTCACCTATGCGATTGTCCCCTTGTGCGAACATCATGGGATCCGGGTCGGGTTCTCTCGTGTGGTTCCGGAAGGGTATTCGGATCCACGACAACCCGGCTCTAGAATTCGCTTCCCGAGGAGCCTCTCATCTCTACCCCGTCTTCGTGATCGACCCGCATTACATGGAACCCGACCCGAACGCTTCCACACCCGGGTCCTCGCTCGCGGGCCTTAACCGCATCAAGTTCTTGCTGGAGAGCCTGGTGGACCTTGACCTGAACCTCAAGACCCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCTGCTGAAGTTGTCATTCGATGCTTGAAGGAGTGGAATGTCGGGAAGTTGTGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTCGATGTTAAGGTTAAGAACTTTGCACTTGATGCTGGAATCGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACCGATATTATAAAGAAGAATGGAGGGAAGCCGCCCCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCGCCATCTCCTATTTCAACCGTGTACTCTTCACTTCCTCCAGTTGGCCATCTTGGAAGCTGTGATATTTCTGAAGTTCCAACACTCAGAGATCTTGGATATGGTGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCTGAAGCATTGAAGAGGTTGGATGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCGTCTGCATTTCTGAAGCCAGCAACAACTGTTTTATCACCTTACCTGAAATTTGGTTGTCTCTCTGCCAGATATTTCTACCAGCGCATTCAGGAAGTATATAAAAGTATGCCAAAGCATGCATCTCCACCTGTTTCTCTTATAGGACAGTTGTTGTGGCGAGAGTTCTTTTACACGGCAGCTTTTGGGACTCCAAATTTTGATAGGATGACAGGCAATAGGATATGCAAGCAAGTTCCTTGGAAGGATGATGATAAATTGCTGGAGGCTTGGAGGGAGGGTAGGACAGGCTTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAAATGGGGCTGGATGCATCATCTGGCACGGCATTCTGTTGCATGTTTTCTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAGAGGACGAGATGTCTTTGGGAGGCTGCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTACGACCCTAATGGAGACTTTATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGAGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGAACAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGTCAGTTGTTTCTCATGATTCTGCGAGTAAAGAGTGCCGAAGGAAAATGGGGGAGGCATATGCACTGAATAAAGAATTGAATGGTCTGGTTAGTGAAGATGATCTGAAAAAGTTGAGGAGGAAATTAGATGAGAGTGAAAGGCAAGGGCAACAGGGTGGAGCTAAAAGATATAAGCAACAGCTGATTGGCTGA 1695 0.4596 MLLLWKGAKQRIWFKTSPMRLSPCANIMGSGSGSLVWFRKGIRIHDNPALEFASRGASHLYPVFVIDPHYMEPDPNASTPGSSLAGLNRIKFLLESLVDLDLNLKTLGSRLLILKGDPAEVVIRCLKEWNVGKLCFEYDTEPYYQALDVKVKNFALDAGIEVFSPVSHTLFNPTDIIKKNGGKPPLSYQSFVKLAGEPPSPISTVYSSLPPVGHLGSCDISEVPTLRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSARYFYQRIQEVYKSMPKHASPPVSLIGQLLWREFFYTAAFGTPNFDRMTGNRICKQVPWKDDDKLLEAWREGRTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWERGRDVFGRLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDFIRHFLPVLKDMPREYIYEPWTAPKSIQNKANCIIGKDYPMSVVSHDSASKECRRKMGEAYALNKELNGLVSEDDLKKLRRKLDESERQGQQGGAKRYKQQLIG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00178 564 CDD USP_Like 49 134 - -
Cca11g00178 564 Pfam DNA photolyase 34 194 IPR006050 -
Cca11g00178 564 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 34 528 - -
Cca11g00178 564 MobiDBLite consensus disorder prediction 542 564 - -
Cca11g00178 564 Gene3D - 168 335 - -
Cca11g00178 564 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 32 170 IPR006050 -
Cca11g00178 564 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 33 215 IPR036155 -
Cca11g00178 564 PANTHER CRYPTOCHROME 34 528 IPR002081 -
Cca11g00178 564 Gene3D HUPs 30 167 IPR014729 -
Cca11g00178 564 Pfam FAD binding domain of DNA photolyase 320 517 IPR005101 -
Cca11g00178 564 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 234 523 IPR036134 -
Cca11g00178 564 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 337 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00178 Cca-Chr11 2171061 2175436 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00178 K02295 - gmx:100780347 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00178 11 2171061 2175436 Cca11g00178 11 2171061 2175436 ECH