Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00172 ATGGCGTTGTTCTCTGCAGCAACTTCAACTGCAACCGTTCTTCCTCGAAACCTCGCATTCGCTtcttccctctctcgctctcttctccgctctccgcgcttcctctcATTCCCCACTGCTCCGCGCAACCGCGCCTCTGTCTCAATCCAAGCCCCACGCGCCCAAgccgccgcctcttcctccgcctccttccacggcctctgcTACGTCGTCGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAAGCCCGACGAGTACGAGAAGCTCGGATCCTACGCCCTCATCGGCCTCCCCGCCTCCTACGCCACGCGCTTCATCGACGCCGGCGAGACCAAGACCAAGTACTCCATCGTCATCGCCGGCGACAACTTCGGCTGCGGCTCCTCCCGCGAGCACGCGCCCGTCGCGCTTGGCGCCGCCGGGGTCTCCGCCGTCGTGGCGGAGTCCTACGCGCGCATCTTCTTCCGGAACTCCGTCGCCACCGGCGAGGTGTACCCGCTCGAGTCGGAGAGACGCATCTGCGAGGAGTGCCACACCGGCGACGTCGTCACGATCGAGCTCGGGGAGAGCCGCTTGATAAACCACACCACCGGGAAGGAGTACCAATTGAAGCCGATCGGCGACGCCGGTCCGGTCATCGAGGCCGGTGGCATCTTTGCCTATGCGAGGAAAACCGGCATGATTCCCTCTCGTTGA 726 0.5675 MALFSAATSTATVLPRNLAFASSLSRSLLRSPRFLSFPTAPRNRASVSIQAPRAQAAASSSASFHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPASYATRFIDAGETKTKYSIVIAGDNFGCGSSREHAPVALGAAGVSAVVAESYARIFFRNSVATGEVYPLESERRICEECHTGDVVTIELGESRLINHTTGKEYQLKPIGDAGPVIEAGGIFAYARKTGMIPSR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00172 241 Gene3D Aconitase, domain 4 61 237 IPR015928 -
Cca11g00172 241 PANTHER 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED 10 239 - -
Cca11g00172 241 TIGRFAM LEUD_arch: 3-isopropylmalate dehydratase, small subunit 68 234 IPR011827 GO:0016836
Cca11g00172 241 Pfam Aconitase C-terminal domain 124 178 IPR000573 -
Cca11g00172 241 PANTHER 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED 10 239 - -
Cca11g00172 241 CDD IPMI_Swivel 70 197 IPR033940 -
Cca11g00172 241 SUPERFAMILY LeuD/IlvD-like 65 238 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00172 K01704 - gmx:100809737 357.066