Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00158 ATGGCTTTGGCACGTTTGGCATTGAAAAATTTGCAGCACAAGGTGTACACTTCCTCTTCCTTGATTGGCCATGATGGTGTGCATAAGCCGAGGTGGAGCAATGAGTTGCTCAGAAGGTTTGCTAGTGCTGCAGCCGGTGATAAGGGAAAATCTGAAGGCAGTGAAGTTGCTGTGACAGAAGGGAAAAAGTCCAATAGGTTGTCCCCTACGAGAAGGGGCAGAAGATGGGGTTGGAGAAATGATGATCGTGATTTCCCTCCTGCTCTTTATGAATTCTTTCCCTCAGGGCTTGGGAATGCACTGATGCAGGCAACTGAGAACATAAACAGGTTGTTTGAGGACATGAAACTGACACCATGGTCTCTGAGTGGGCGTGTGAAAGAAAAGGATGACCATTACAAACTGCGGTACGAGATGCCAGGGATTGCCAAAGAGGATGTGAAGATCACCATTGATGATGGGGTGCTGACAATAAAGGGAGAGCACAAGGAAGAGAAGGAAGAAAGGGATGATGATGAGTATTGGTCTTCAAGTAGTTATGGATACTATAACACAAGCCTCGTTTTGCCTGATGATGCCAAGCCTGATGAAATTAAGGCAGAGTTGAAGGACGGTGTCCTTACTGTAATTGTTCCTAGGACTCAGAAGCCCCAAAAGGATGTCAAGCATGTCACAGTACAATGA 684 0.462 MALARLALKNLQHKVYTSSSLIGHDGVHKPRWSNELLRRFASAAAGDKGKSEGSEVAVTEGKKSNRLSPTRRGRRWGWRNDDRDFPPALYEFFPSGLGNALMQATENINRLFEDMKLTPWSLSGRVKEKDDHYKLRYEMPGIAKEDVKITIDDGVLTIKGEHKEEKEERDDDEYWSSSSYGYYNTSLVLPDDAKPDEIKAELKDGVLTVIVPRTQKPQKDVKHVTVQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00158 227 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 45 227 - -
Cca11g00158 227 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 45 227 - -
Cca11g00158 227 SUPERFAMILY HSP20-like chaperones 113 225 IPR008978 -
Cca11g00158 227 MobiDBLite consensus disorder prediction 43 75 - -
Cca11g00158 227 Gene3D - 95 227 IPR008978 -
Cca11g00158 227 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 111 227 IPR002068 -
Cca11g00158 227 CDD ACD_sHsps-like 126 213 - -
Cca11g00158 227 Pfam Hsp20/alpha crystallin family 126 227 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00158 Cca-Chr11 1930997 1932162 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00158 K13993 - gmx:100787482 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00158 11 1930997 1932162 Cca11g00158 11 1930997 1932162 ECH