Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00153 ATGGAGACCGAACCGCAAAGTGCTGCTAAAGACGAGGTCTTGTCGGTTGAGCTTTCAGCACCTCCTGCATGGAAGAAACTGTTCTTCCCTAAGAAAGTAGGAACACCAAGGAAAAGTGAGATTGTATTCATAGCTCCTACGGGGGAGGAGATCACTTCCAAGAAACAATTGGAGCAGTACCTAAAGGCACATCCTGGGAATCCCTCCATCTCGGAGTTTGACTGGGGAACCGGTGAGACTCCTAGGCGATCTGCAAGGATCAGCGAGAAGGTCAAATCAACTCCACCATCAGAGACTGAGCCTCCAAAGAAGCGACCTCGAAAATCATCGTCCGGCTCAAAGAAGGATAACAAAGAAACTGAACCTGCTGCTGAGGAAGAAGCCAAGGCTGATGCAGAAGAAACTGATAATAACACAGAAGCAAAGACTGCCGCAGAGGAAACCAAGAACAATAACTCAGAAGTGGAAAATGCAAGTGATGAAAAACCTAAGGGGGAAGAAGCAATGTTGGCAGAGTCGGGGGAGAAATTTGCTGGTGGAGAAGCTTTGAATACTGAAGTCACTGAAAAACCCCTAGAGGATGCTCCGGCACCGGCACCGGCACTGATTGTATCAGAAAAAGAAAATGGCACATTTGAGAGTAAGCAGGACATAGCAGATACTGTGATGGTTGAGGCAAATGGGGGAGCTGAGACTGAGAAAGTGAAGGACAATGTTGAAGAGGCTAAAGAAATCCCAGTAAGTGATGGAAAAAGCAGCATTCATGCTGAGGAGCAAGTAAATAAAATGGTTGACAATGGACAAGTAATTTGGAGCTGTGCTCAGTGA 828 0.4662 METEPQSAAKDEVLSVELSAPPAWKKLFFPKKVGTPRKSEIVFIAPTGEEITSKKQLEQYLKAHPGNPSISEFDWGTGETPRRSARISEKVKSTPPSETEPPKKRPRKSSSGSKKDNKETEPAAEEEAKADAEETDNNTEAKTAAEETKNNNSEVENASDEKPKGEEAMLAESGEKFAGGEALNTEVTEKPLEDAPAPAPALIVSEKENGTFESKQDIADTVMVEANGGAETEKVKDNVEEAKEIPVSDGKSSIHAEEQVNKMVDNGQVIWSCAQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00153 275 Coils Coil 138 158 - -
Cca11g00153 275 MobiDBLite consensus disorder prediction 134 171 - -
Cca11g00153 275 MobiDBLite consensus disorder prediction 62 181 - -
Cca11g00153 275 Gene3D - 10 85 - -
Cca11g00153 275 SUPERFAMILY DNA-binding domain 10 106 IPR016177 GO:0003677
Cca11g00153 275 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 9 243 IPR039622 -
Cca11g00153 275 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 10 80 IPR001739 GO:0003677
Cca11g00153 275 MobiDBLite consensus disorder prediction 96 125 - -
Cca11g00153 275 Pfam Methyl-CpG binding domain 18 79 IPR001739 GO:0003677
Cca11g00153 275 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11 9 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00153 Cca-Chr11 1895118 1897871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00153 - - aprc:113857069 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00153 11 1895118 1897871 Cca11g00153 11 1895118 1897871 ECH