Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00137 ATGTACTTGGTCCTGAAAAATTGTGATGGCAAAGACGGCACATCAACGCATGGTGCCACGTGGCAAAGAATCAACGGAGAGAGTGTTAGAGAGAGAAGCTATCAACTTATTAGCAACAAGGAGAGGCCAGAATTGCTCTCAAATCCTCAAAAAGTGCCAAAAATGCCCCCaagatcaggaaaagggaaatcaaacaaagcaaaggcagagaagaagaaaaaggaagagaaaGCGGCAACAGCACCTTCTCTTGTTGACATCACTGTGGTCACTCCATATGACACAGAGGTTGTCTTAAAGGGTATCTCTACCGATAAGATACTGGATGTGAGAAAATTGTTGGCTGTCAAGGTGGAGACATGCCATTTCACAAACTATTCTTTATCTCATGAGGCCAAAGGGGAGAGATTAAGTGATAGAGTGGAGGTTGTTACCCTTAAGCCATGTCTTCTAAGAATGGTTGAAGAGGATTACGCAGAGGAAGCCCAAGCAATTGCGCACGTGCGGAGGCTCTTGGACATTGTGGCCTGCACAACAAGGTTCGGTAGGCCCAAACGTGGATCACCAAACCCAGAAACAAAGCCCAAGAAGAACGGTAAGGCCCAACATCAGAGCAAGACGGGCTCGAGTGTGAGCCCACCGGAGACACCGAATGGGGAATCCCGGGTGGGgtcaccgtcgtcgtcggagcctccgtcgccgatctccgACAACGTGGGGATGAAGGCGATTCACACGACGCCGAAGCTCTCCGATTTCTACGAGTTCTTCTCTTTCTCTAACCTCTCTCCCCCCATTTTACATTTGAAGAGGTGTGAAGTGAAGGATGAAGAAGATAAGCGCAAAGGGGGTTTCTTTCAGCTTCAGGTTAAAATATGCAATGGAAAGGTGATAGAAGTGGTTGGTTCAGAGAAAGGGTTCTACACTGTAGGGAAGCAGTCTCTGCGCAGCCACACTTTGGTTGATCTTCTGCAACAGCTCAGCAGAGGCTTTGCTAACGCATATGAATCATTGATGAAAGCTTTTTTGGAACGTAATAAGTTTGGAAATCTTCCATATGGATTCCGAGCAAATACATGGCTTGTTCCTCCATCTGTTGCCGAGTCTGCTTCAAATTTTGTGGCATTACCCACTGAGGACGAAAACTGGGGTGGCAATGGTGGTGGCCAAGGAAGAAATGGCGAATTTGATCATAGACCATGGGCAACAGATTTTGCAATATTGGCCTCTCTTCCTTGCAAAACTGAGGAGGAGAGAGTGATCAGAGATAGAAAAGCATTTCTCCTTCACAGTCAATTTGTTGATGCCTCAATATTTAAGGCTGTTGCGGCTATACGGCATGTCCTGGAATCAAAATCAGACATGAAGAATGAATTGAATTCTTCTCCAGGTTCTATTCTGCATGAGGATCACGTGGGGGACTTGTCCATTGTAGTCAAACGTAGCATCCAGAATGGAAATAGAAAGTATGATTCTGTTGTGGATGAATCCAGCATCCGCAAGGAGGATGCTCAGAAGAATTTGATCAAAGGGTTGACTGCAGATGAAAGTGTAATTGTTCATGATACTTCTTCCTTGGCTGTTGTCGTTGTACACCACTGTGGATATACTGCAACAGTAAAGGTTGTGGGTAATGTGAACATGAAGAAGCCCAAAGTTCGAGATATTGAATTAGATGATCAGCCAGACGGAGGGGCAAATGCTCTCAACGTCAACAGTTTGAGGCTACTGCTTCACAAGTCTGGAGGTGAGTCATTAGAAAGGACTTTATCATCCGTATCAAATTCGGATGACCTAGATGCTTCTAAAAGTCTAGTTAGGAAGGTGGTTCAAGAATGCATGGAAAAGATAAAGGAGGAGCCAAGTGTTTCAAGAAGGTTTATTCGATGGGAACTTGGCTCCTGTTGGATGCAGCATTTGCAAAAACAGGAAACTTCAACAGATAACAGTTCAAAAAACAAAGAAGATGGCAATGACATTGAGCAAGCTGTCAAAGGTCTGGGAAAGCAATTTAAATTTTTGAAGAGGAGAGAGAAGAAATTAGATAATCTACATGGTGCAGATTCCAGGGAGCAAAATGACGCTACCCATAAAGTTGAGCAGAACAATGATGACTTAAGTAACTCTAATGAATTAGAGAAACTACTTTCTGAAGAAACATTTTTGCGTCTCAAAGAATCAGGAACTGGTCTTCACAGAAAGTCAGTGGATGAGCTTATCAGCATGGCAGACAAGTTTTATGATGAAATTGCCTTGCCGAAACTGGCTATGGACTTTGGATCACTTGAACTTTCTCCAGTGGATGGGCGTACACTGACTGACTTCATGCATTTGAGAGGATTACAGATGCGATCATTGGGTAAAGTGGTTAAACTTGCAGAGAATCTTCCACACATTCAATCCCTCTGCATTCATGAGATGGTTACTCGAGCTTTCAAGCATCAACTTAAAGCAGTTATTGCCTCTGTTGATAATGTAGCTGATCTCTCTGCAGCCATTGCGTCAACACTGAATTTTTTACTTGGCGGGTGTCAAACAGAAGATACTGACCAAAGTTTGAGTGATGATCATAATCTCAGAATTCAGTGGTTACGAATATTTTTGTCCAAAAGATTTGGGTGGACATTGAATGATGAATTTCAACATTTGAGGAAGTTATCGATTCTCAGGGGACTCTGTCATAAGGTATCAACATTCCATCGCCTCATTGTATTTTCTTTACATGAATCTTTTATTAATTGCAGTTGTATTTGTTCTCAGGTTGGATTGGAATTGTTCCCAAGAGATTATGAGTTGGACTCCCATAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCCGTTTGCAAGCATGTAGGGTGCTCCTCAATAGATGGACGCAATTTATTGGAATCTTCTAAAATTGCTCTTGATAAAGGAAAGCTCGAGGATGCCGTAAATTATGGAACAAAGGCATTAGCTAAGATGATGGCTGTTTGTGGCCCCTATCACCGAAATACAGCAAGTGCGTATAGTCTTCTAGCTGTGGTTCTCTATCACACTGGAGATTTTAATCAGGCCACTATTTATCAGCAAAAGGCATTGGATATAAATGAGAGGGAGCTTGGACTTGACCACCCGGACACAATGAAAAGCTATGGGGATCTTTCTGTTTTTTATTATCGTCTACAACACATTGAGTTGGCTCTGAAGTATGTTAATCGTGCTCTATTCCTTCTCCATTTTACATGTGGGCTGTCTCATCCAAACACAGCTGCAACATATATAAATGTAGCTATGATGGAAGAGGGCATGGGAAATGTTCATGTAGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACTGCTGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATGGATGCATATTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAACTTGGATCAGAAGACCTCCGTACACAGGATGCTTCCGCATGGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGACACCTTAGCGTGTCAGATCTCCTGGATTTTATTAGTCCTGACCCAAAAGGAAACGATGCTCAGAGGAAACAGAGGCGTGCAAAGATACTCCCAACAAGTGATAGCATCCGTCAAGAACATGATGATGCAATTGCTGATGAGAGCATACATTTTGATAACCCAAAAGATGCTCCAAGTATGGTAGAAGGCAATATAGAAGAAACAAATGGCACAATTGATTCTCAAGTACCGAAAGAAAATGGTGACTTCACTAGGTACAGGCCAGTGACAAGGGAAGTTGTTTCTGAGACATCATCTGATGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGGTCAGGAAATGCTGCTAACCGCAGCAAGTTTGGACGTAGAAAGCGACCAGTTCTATCAAAGCTCAGCATTAATGGTTCCAATAATTACCTTTACAAGGATGGAAGTTCTAGGAATGACATTACCTCGCCACCACAAAGAGGAGTTCCAAAAGTCATGTCAGATATGTCATCTCCATCTAGACAACCAAAAGCTCGAAACGTAGCTTTGAACGAGGATTCTGTTAATCATCCAACAAGAGCTTCTAAAATTTCATCTCCAGCATCTCTAAATTCCTTGGCTTCAAAGTCTATATCTTACAAAGAAGTGGCTTTGGCACCACCAGGTACAGTTTTGAAGCCATTGTTGGAAAAGGCTGAGATGGACAAGGCTAATGCTGAAGATGAGATATGCAGCAGTCCAGCTGTGACATCAACAAATGAAGGCACCTGCCAAAGTTCCATTATTAATACAGTTTCTCAGCATGATGAAACAGAGGAATCTCATGAAATTGAACCTAAACAAAATTCTACATCAGAACATGAGAAGGTTTCCCTTGCTTTTGATCAGGCAAAACCTACTGAAACAAATGGAAGTAAGCTTTCAGCTGCAGCCAAACCGTTCAATCCAGGAATGTTGTCCATGTCTCATCATTTAAATTCAGTTTCCCTCACAAGCATGTATGATACAGATGTTAGTCAAGGCATGCACGTGGAGCCTGTGCTTCCCCCTGCTGTTGCTAGGGTCCCTTGTGGGCCTAGATCACCTCTATATTACAGAACCAACTATACTTTTCGCATGAAACATGGCATGGCAGAAAAAAATAAGCTTGATGAAAACTTTGTTGAAATCAAAGAAAGTTCCTCAAAAAACAGTATTTCTGAATCTGAGAAGTCTGAGATAGGGAGACAGATATTGCTCAGTCTTCTAGTGAAATCTGTCAAGGATAATATTGATTCTGTGGATGAATCTAAGGATGGTGAAGGAAAAATTGAGAACTTGGAAAGTTGTTCTGATGAAATAGCCAAAGACAGTGCTGTCATAAACATTAAGTATGGAAATGAAGAAAAGAATAAGACGGTGCCTCATTCCAGTGATGGTGGTGAGGAAGAGAAATTAGGTGTTACTGAGAAAAAGAATGGAGATGGTGAAGGGTTTATAGTTGTCTCAAAGAGGAGGAAAAACAGGCAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAGTCCATCTGTGCTTCAGATTTGTTTATTCTCTATATAGATAGTTTCATTTCACATCTGGAGTGGAATTGA 5223 0.4114 MYLVLKNCDGKDGTSTHGATWQRINGESVRERSYQLISNKERPELLSNPQKVPKMPPRSGKGKSNKAKAEKKKKEEKAATAPSLVDITVVTPYDTEVVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEAKGERLSDRVEVVTLKPCLLRMVEEDYAEEAQAIAHVRRLLDIVACTTRFGRPKRGSPNPETKPKKNGKAQHQSKTGSSVSPPETPNGESRVGSPSSSEPPSPISDNVGMKAIHTTPKLSDFYEFFSFSNLSPPILHLKRCEVKDEEDKRKGGFFQLQVKICNGKVIEVVGSEKGFYTVGKQSLRSHTLVDLLQQLSRGFANAYESLMKAFLERNKFGNLPYGFRANTWLVPPSVAESASNFVALPTEDENWGGNGGGQGRNGEFDHRPWATDFAILASLPCKTEEERVIRDRKAFLLHSQFVDASIFKAVAAIRHVLESKSDMKNELNSSPGSILHEDHVGDLSIVVKRSIQNGNRKYDSVVDESSIRKEDAQKNLIKGLTADESVIVHDTSSLAVVVVHHCGYTATVKVVGNVNMKKPKVRDIELDDQPDGGANALNVNSLRLLLHKSGGESLERTLSSVSNSDDLDASKSLVRKVVQECMEKIKEEPSVSRRFIRWELGSCWMQHLQKQETSTDNSSKNKEDGNDIEQAVKGLGKQFKFLKRREKKLDNLHGADSREQNDATHKVEQNNDDLSNSNELEKLLSEETFLRLKESGTGLHRKSVDELISMADKFYDEIALPKLAMDFGSLELSPVDGRTLTDFMHLRGLQMRSLGKVVKLAENLPHIQSLCIHEMVTRAFKHQLKAVIASVDNVADLSAAIASTLNFLLGGCQTEDTDQSLSDDHNLRIQWLRIFLSKRFGWTLNDEFQHLRKLSILRGLCHKVSTFHRLIVFSLHESFINCSCICSQVGLELFPRDYELDSHKPFGKNDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMAVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMDAYSLSVQHEQTTLKILQAKLGSEDLRTQDASAWLEYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDPKGNDAQRKQRRAKILPTSDSIRQEHDDAIADESIHFDNPKDAPSMVEGNIEETNGTIDSQVPKENGDFTRYRPVTREVVSETSSDEGWQEANSKGRSGNAANRSKFGRRKRPVLSKLSINGSNNYLYKDGSSRNDITSPPQRGVPKVMSDMSSPSRQPKARNVALNEDSVNHPTRASKISSPASLNSLASKSISYKEVALAPPGTVLKPLLEKAEMDKANAEDEICSSPAVTSTNEGTCQSSIINTVSQHDETEESHEIEPKQNSTSEHEKVSLAFDQAKPTETNGSKLSAAAKPFNPGMLSMSHHLNSVSLTSMYDTDVSQGMHVEPVLPPAVARVPCGPRSPLYYRTNYTFRMKHGMAEKNKLDENFVEIKESSSKNSISESEKSEIGRQILLSLLVKSVKDNIDSVDESKDGEGKIENLESCSDEIAKDSAVINIKYGNEEKNKTVPHSSDGGEEEKLGVTEKKNGDGEGFIVVSKRRKNRQKITNGVTELYNQQSICASDLFILYIDSFISHLEWN 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1296 1320 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1470 1487 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1664 1686 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 202 235 - -
Cca11g00137 1740 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 55 896 - -
Cca11g00137 1740 Gene3D Tetratricopeptide repeat domain 961 1205 IPR011990 GO:0005515
Cca11g00137 1740 ProSiteProfiles Clueless (Clu) domain profile. 379 651 IPR025697 -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1336 1359 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1368 1405 - -
Cca11g00137 1740 SUPERFAMILY TPR-like 968 1101 IPR011990 GO:0005515
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1275 1405 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1467 1492 - -
Cca11g00137 1740 CDD CLU-central 766 896 IPR033646 -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 182 240 - -
Cca11g00137 1740 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 916 1722 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 682 701 - -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 37 77 - -
Cca11g00137 1740 Pfam Mitochondrial function, CLU-N-term 104 175 IPR028275 -
Cca11g00137 1740 Pfam Tetratricopeptide repeat 1001 1071 - -
Cca11g00137 1740 Pfam Tetratricopeptide repeat 1085 1159 - -
Cca11g00137 1740 Pfam Translation initiation factor eIF3 subunit 135 764 896 IPR033646 -
Cca11g00137 1740 MobiDBLite consensus disorder prediction 1663 1686 - -
Cca11g00137 1740 SMART tpr_5 1044 1077 IPR019734 GO:0005515
Cca11g00137 1740 SMART tpr_5 1086 1119 IPR019734 GO:0005515
Cca11g00137 1740 SMART tpr_5 1002 1035 IPR019734 GO:0005515
Cca11g00137 1740 MobiDBLite consensus disorder prediction 682 710 - -
Cca11g00137 1740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 55 896 IPR027523 GO:0006996
Cca11g00137 1740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 916 1722 IPR027523 GO:0006996
Cca11g00137 1740 ProSiteProfiles TPR repeat profile. 1002 1035 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00137 Cca-Chr11 1680408 1692489 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00137 K03255 - gmx:100784276 2722.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00137 11 1680408 1692489 Cca11g00137 11 1680408 1692489 ECH