Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00135 ATGTCGAAGGAGGAGGAGGTGTTCATAGGCGCGATCGACCAGGGTACGAGCAGCAGCAGGTTCATAATATACGACGGGACGGCAACGGCAATCGGATGCCACCACGTGGAGTTCACGCAGTTCTACCCGGAGGCTGGGTGGGTGGAGCACGATCCCATGGAGATCGTTGAGAGCGTCAAGGTCTGCGTCGCCAAGGCCGTCGACAAGGCCACCGCCGATGGCTTCAACGTCGATAAGGGTCTCAAGGCCATCGGTCTCACCAATCAGAGGGAGACCACTCTCCTTTGGAGTAAATCCACTGGCCTCCCTCTCTACAACGCTATTGTTTGGATGGACGCTCGCACTTCCACCATTTGCAGGAGACTGGAAAAGGAGTTATCCGGCGGCAGAAACCATTTTGTGGAGAGGTGTGGCTTGCCTATTAGCACATACTTTAGTGCTGTGAAGCTGCTGTGGTTGATGGAAAATGTGGATGCTGTGAAGGAGGCAATAAAGAAGAATGATGCGCTGTTTGGAACTATTGACACTTGGTTGATATGGAATCTAACTGGTGGGGTGAAAGGGGGATTGCATGTCACTGATGTTTCCAATGCATCCCGGACAATGCTCATGAATCTAAAAACCCTTGATTGGGACGCGTCTATCTTAGAAACCCTTAAAATTCCTGCTCAAATTTTGCCTAAAATTGTTAGCAATGCTGAAGTTATAGGAGAGATTGGGTCTGGATGGCCAGTTGCTGGGGTGCCTCTTGCTGGATGTTTAGGGGATCAACATGCAGCCATGTTGGGACAAGCATGCCGTAGAGGGCAGGCTAAAAGCACTTATGGCACAGGTGCTTTCATACTGCTAAATACTGGGGAAGAGATAATTAAATCAACGCATGGTCTTTTATCCACTGTAGCCTTTAAGCTTGGCCCAGAAGCTCCAACCAATTATGCATTGGAAGGGTCAGTTGCTATTGCTGGAGCCGCAGTGCAGTGGCTCAGAGACAGCCTTGGCATCATTTCCAGTGCTCCAGAGATAGAGGAGCTGGCATTACAGGTTGAAAACACTGGTGGGATTTACTTTGTTCCCGCTTTCAATGGATTGTATGCTCCATGGTGGCGTGAAGATGCTCGTGGGGTTTGCATTGGAATAACAAGGTTTACAAGCAAGGCGCACATTGCTCGAGCCGTGCTTGAGAGCATTTGTTTCCAAGTGAAAGATGTCTTGGATTCAATGCATAAAGATTCAGGAAATGTTGAATCCAAAACAGAGGAGTTTTTGCTTAGAGTGGATGGTGGGGCAACTGTTAACAACCTGTTGATGCAGATTCAGGCAGATTTGTTGGGAAATCCAGTGATTAGACCTACTGACATAGAGACAACGGCACTTGGAGCAGCCTATGCTGCAGGATTAGCTATTGGGATTTGGAATGAAGATAATGTTTTCGATACTAAGGTGAAGATGAAGAATGCTAATGTTTTCCGCCCCCAAATTGCTGAGGAAGTGAGGAAAAAGAAAGTGGAGGGTTGGTGCAAAGCTATTAGTAGAACTTTTGACTTGGCTGATCTTGCTATTTGA 1563 0.4779 MSKEEEVFIGAIDQGTSSSRFIIYDGTATAIGCHHVEFTQFYPEAGWVEHDPMEIVESVKVCVAKAVDKATADGFNVDKGLKAIGLTNQRETTLLWSKSTGLPLYNAIVWMDARTSTICRRLEKELSGGRNHFVERCGLPISTYFSAVKLLWLMENVDAVKEAIKKNDALFGTIDTWLIWNLTGGVKGGLHVTDVSNASRTMLMNLKTLDWDASILETLKIPAQILPKIVSNAEVIGEIGSGWPVAGVPLAGCLGDQHAAMLGQACRRGQAKSTYGTGAFILLNTGEEIIKSTHGLLSTVAFKLGPEAPTNYALEGSVAIAGAAVQWLRDSLGIISSAPEIEELALQVENTGGIYFVPAFNGLYAPWWREDARGVCIGITRFTSKAHIARAVLESICFQVKDVLDSMHKDSGNVESKTEEFLLRVDGGATVNNLLMQIQADLLGNPVIRPTDIETTALGAAYAAGLAIGIWNEDNVFDTKVKMKNANVFRPQIAEEVRKKKVEGWCKAISRTFDLADLAI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00135 520 PIRSF GlpK 6 519 IPR000577 GO:0005975|GO:0016301
Cca11g00135 520 Pfam FGGY family of carbohydrate kinases, N-terminal domain 9 263 IPR018484 GO:0005975|GO:0016773
Cca11g00135 520 Pfam FGGY family of carbohydrate kinases, C-terminal domain 271 467 IPR018485 GO:0005975|GO:0016773
Cca11g00135 520 SUPERFAMILY Actin-like ATPase domain 266 513 IPR043129 -
Cca11g00135 520 Gene3D - 265 514 - -
Cca11g00135 520 PANTHER SUGAR KINASE 4 516 - -
Cca11g00135 520 SUPERFAMILY Actin-like ATPase domain 9 266 IPR043129 -
Cca11g00135 520 ProSitePatterns FGGY family of carbohydrate kinases signature 1. 144 156 IPR018483 GO:0005975|GO:0016773
Cca11g00135 520 PANTHER - 4 516 - -
Cca11g00135 520 Gene3D - 2 263 - -
Cca11g00135 520 TIGRFAM glycerol_kin: glycerol kinase 8 513 IPR005999 GO:0004370|GO:0006072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00135 K00864 - gmx:547750 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00135 11 1656044 1658389 Cca11g00135 11 1656044 1658389 ECH