Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00131 ATGGGGGGAGCGTGTTCTAGGAAGCAAGAGCAGGACAATGAAGATGGTCTTACCAGGGGACTATCACGAAGATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTGTAGATTTTCGCATACAAAAAGGAGAATGTCCATCTCTGTTGGACTTGTGCGTCCAGAAAATAACTGAGGATATTGAAAAATATGACACATTTTCTGTGCTGCCACGGGATATAAGTCAGCTAATTTTTAATAATTTGGTTTACTCCCGAAGTCTAACCAGTGCTTCCCTAGAAGCTTTTCGAGATTGTGCTCTCCAGGATCTTTACTTGGGAGAATATGATGATGTTAATGATAATTGGATGGGTGTCATCGCATCCCAGGGTTCATCTTTACTTTCTGTAGACCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACATACCTTAAAGATTGTGAAAGTCTCATGTCCTTAAATCTAAATCACTGTGACCAAATTTCAGATCGTGGACTAGAGTGTATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATTTCTGCTCAAGGAATGAGTACCTTTTCCGGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCAAGGTTTGACCAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATTACAGATTATGATATGAAACCTCTTTCAGGGCTTGCAAGCTTGAAAAGTCTAGAGATTTCTTCCAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAAAGGGTTACTGAAGCTTGCCCTATTAAATTTGGAAGGGTGCTTTGTAACAGCTGCTTGCTTGAATTCTCTTGCAGAGCTTCCTGCACTGTCAAACTTGAATCTTAGTAGATGTAATCTCTCTGACAATGGATGCAAAAAATTTTCACGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAATGTCATAACAGATACGTGTTTATTTCATTTGAAAGGTTTGACACGTTTGGAGAGTTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGACTGGTCAATTTGGCTGGCCATAAGCAATTGAAATGCTTGGAATTGTCTGATACAGAAGTTGGAAGCAATGGACTACACCATTTATCAGGATTGTCTAGCCTGCAGAAAATAAATCTGTCATTTACCATGGTTAGTGATAGTGGTTTGACAAAATTATGCGGACTCTCGTCGTTGAAGTCACTTAATTTGGATGCTTACCAAATTACTGATACTGGATTGGCAAATCTTACAAGTTTGACTGGCCTCATTGACCTGGATTTGTTTGGTGCACGAATCACAGATATTGGGACAAACCATTTGAAAAAATTTAAGGACCTGAAGTCTTTGGAAATATGCGGTGGAAGTTTGACTGATGCTGGAGTGAAGAATATCAGAGAGCTTTCTTCTCTAGTGTGCTTAAATTTATCGCAGAACAGCAACCTTACAGACAAAACCCTGGAGTTAATTTCTGGGCTGACTGGGTTGATTTCTCTGAATGTTTCAAATTCTCGTATCACCAGTGCTGGACTGCAGCATTTGAAAACACTGAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATCAAGAAACTGAAATCGGTATACCTCCCGAATCTGCTAAGCTTTCGGCCAGGGTAG 1734 0.3962 MGGACSRKQEQDNEDGLTRGLSRRYCKCGSLKWWTSSFSYPSVDFRIQKGECPSLLDLCVQKITEDIEKYDTFSVLPRDISQLIFNNLVYSRSLTSASLEAFRDCALQDLYLGEYDDVNDNWMGVIASQGSSLLSVDLSGSDVTDFGLTYLKDCESLMSLNLNHCDQISDRGLECISGLSNLTSLSFRRNDSISAQGMSTFSGLVNLVKLDLERCPGIHGGLVHLQGLTKLESLNLKWCNCITDYDMKPLSGLASLKSLEISSSKVTDFGISFLKGLLKLALLNLEGCFVTAACLNSLAELPALSNLNLSRCNLSDNGCKKFSRLENLKVLNLGFNVITDTCLFHLKGLTRLESLNLDSCKIGDEGLVNLAGHKQLKCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMVSDSGLTKLCGLSSLKSLNLDAYQITDTGLANLTSLTGLIDLDLFGARITDIGTNHLKKFKDLKSLEICGGSLTDAGVKNIRELSSLVCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSVYLPNLLSFRPG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00131 577 Gene3D Ribonuclease Inhibitor 56 219 IPR032675 -
Cca11g00131 577 Gene3D Ribonuclease Inhibitor 373 453 IPR032675 -
Cca11g00131 577 Gene3D Ribonuclease Inhibitor 220 298 IPR032675 -
Cca11g00131 577 Gene3D Ribonuclease Inhibitor 454 572 IPR032675 -
Cca11g00131 577 SUPERFAMILY RNI-like 125 438 - -
Cca11g00131 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Cca11g00131 577 SMART LRR_CC_2 349 373 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 301 325 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 542 566 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 421 445 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 228 253 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 493 518 IPR006553 -
Cca11g00131 577 SMART LRR_CC_2 154 179 IPR006553 -
Cca11g00131 577 Pfam Leucine Rich repeat 180 201 IPR001611 GO:0005515
Cca11g00131 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Cca11g00131 577 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Cca11g00131 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 534 - -
Cca11g00131 577 Gene3D Ribonuclease Inhibitor 299 372 IPR032675 -
Cca11g00131 577 PANTHER UNCHARACTERIZED 2 534 - -
Cca11g00131 577 SUPERFAMILY L domain-like 370 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00131 Cca-Chr11 1606790 1619002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00131 301 557 Receptor kinase-like Gene Family AT2G25790 27.626 4.20e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00131 - - gmx:100795219 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00131 11 1606790 1619002 Cca11g00131 11 1606790 1619002 ECH