Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00125 ATGAGAGATTGGTATCCCACTGAAAACAGAGAATTAGGCCCAACAAACCACCCTTCGGAGGAGATCGTCGCCGGACCAACGATTCCTCTCTCCGCCACCACGGTGCTCCAGGGAGGGAGTTTGAATTTGATGGATTCCAGTAATTGGAGAATTAATCAAGGAACTAACCCCACTATGGATACAAGTGATTGGAGAGCTCAATTACCACCTGAAGCACGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACATCTTCCTGTTTCTGGTCCTGATGGATTGCATGAACTTCGGAAGATTGCTCAAAGGTTTGAAGACAAGATTTTTACTGCTGCTATAAGCCAGCCTGATTATCTTCGGAAAATATCTTTAAAGATGCTTACAATGGAAAATAAATCCCAAAATACCTTGGGTAGCAATATGCCACCAAATCACGTTGGCCCTAGCAATGAACCTCCTGATCAAGGACTTGTTTTGCAGCCTCAAGTTCAAAATCATGGGCAACAACATTCTATTCCTTTGCCTAATCAGCTCCAGCCACATCAGCAGCTTCTATCTCAAAACATTCAAACTAATGTTGCGTCTCAACCTAACCTTGCACCTGTATCTAGTCTATCCCTGACTCCCAGCCAAAATATTGTCCAGAATTCCAACATACAGAATATACCTGGGCCAAATTCAGTTGGGAGCACTATTAGCCAAAATTCCAACTTACAGAATATGTTTGCTGGTTCTCAGAGACAAATGCCAGGAAGGCAGCAGATTGCTCCCCCACAGCAACAGCTGCAAGCACAAAATCAACAACAATATCTTTACCAACAGCAGCTTTTGAAGCAGAAACTCCACTTGCAATCTCTGATGCTGCTGCAGCAGCAGCAACAACATAACCTTCTGCAACGAAATCAGTTGCAATCTTCTCAGCAATCTGTCATGCAAACTTCATCTGTTATGCAGCCCTCCATGATGCAAACACCTTCTCTATCTAGCCTTCCACAGAATCAGCAGTCTACTAATGTTCAACAGTCAACGCAGTCCATGCAGCAGCAACATTCACAAGTTATCAGGCATCAACAACAAAAACCGTTGACTCAACAGCAACAACAGCTTATGGGGCCTCAGTCAAATACAACAAACATGCAACACACACAGATGCTTGGGCAACAGAACAATGTTGGTGATATACAGCAATCACAGAGGATGCTTTCACAACAGAATAATCTTGCGAACATGCAACAGCGACAGCAACAGTTAATAAATCAGCTAAATGTTCTTGATCAACAAAAACAGTTATATCAATCTCAAAGAACTCTTGCAGAAACATCAGCAACTTCTCTGGATTCTACAACACAGACTGCACAACCAAGTGGGGTAGATTGTCAAGAAGTGTACCAGAAGttccacccacaaAACTATGCTGCTACTCAACAGACCAACATTAGTTCCTTATTGTCGCAAGGTGGGGCAAACATGATTCAACCAAATGCCCTTTGGTCAGGTTCTAGTGAACTTCAACACCTAGGAACAACAGATGCTGCAGAGTCAACAATTTAA 1557 0.422 MRDWYPTENRELGPTNHPSEEIVAGPTIPLSATTVLQGGSLNLMDSSNWRINQGTNPTMDTSDWRAQLPPEARQRIVNKIMDTLKKHLPVSGPDGLHELRKIAQRFEDKIFTAAISQPDYLRKISLKMLTMENKSQNTLGSNMPPNHVGPSNEPPDQGLVLQPQVQNHGQQHSIPLPNQLQPHQQLLSQNIQTNVASQPNLAPVSSLSLTPSQNIVQNSNIQNIPGPNSVGSTISQNSNLQNMFAGSQRQMPGRQQIAPPQQQLQAQNQQQYLYQQQLLKQKLHLQSLMLLQQQQQHNLLQRNQLQSSQQSVMQTSSVMQPSMMQTPSLSSLPQNQQSTNVQQSTQSMQQQHSQVIRHQQQKPLTQQQQQLMGPQSNTTNMQHTQMLGQQNNVGDIQQSQRMLSQQNNLANMQQRQQQLINQLNVLDQQKQLYQSQRTLAETSATSLDSTTQTAQPSGVDCQEVYQKFHPQNYAATQQTNISSLLSQGGANMIQPNALWSGSSELQHLGTTDAAESTI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00125 518 MobiDBLite consensus disorder prediction 135 160 - -
Cca11g00125 518 Pfam KIX domain 62 141 IPR036546 -
Cca11g00125 518 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 44 424 IPR044661 GO:0003713|GO:0031490
Cca11g00125 518 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 412 468 IPR044661 GO:0003713|GO:0031490
Cca11g00125 518 Gene3D Coactivator CBP, KIX domain 63 140 IPR036529 GO:0003712|GO:0006355
Cca11g00125 518 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 412 468 - -
Cca11g00125 518 SUPERFAMILY Kix domain of CBP (creb binding protein) 61 135 IPR036529 GO:0003712|GO:0006355
Cca11g00125 518 MobiDBLite consensus disorder prediction 306 380 - -
Cca11g00125 518 Coils Coil 402 436 - -
Cca11g00125 518 MobiDBLite consensus disorder prediction 1 23 - -
Cca11g00125 518 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 44 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00125 Cca-Chr11 1499684 1509604 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00125 K14972 - gmx:100805336 362.459