Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00113 ATGGCCATTCTTCTCCGTCTCCGAGGcaggaccaggaccagaaccagaaccagaaccgaaccTTCTCCGACCCTCTTCTTCTCCACAAATTCCAACTCCGGTTCAAACTCTAACTCTCCTTTCTCTTCCCTCTTCAAAGACATCAAGGCCGGTCTCAAAAACCCCCAAACCTCAAACCCTAATTTCTCCCTCCGCGCTCCCCACGCCGCCTCCACCCACGAGATCCAAAAGAATCTCGCCGAGTTccgctcccgcaccgccgcgcctccgccctccggcacgccgccgccgcAGGTCTCGTTCCAGGAGCTCTACAATGACCGCCTCCAAAACCCCTCCAAATCGCGACCCGCCAACATGGACGGCATTTTCCAGAGCCTGAAGAGCATCAAGGCCAAAACCCCCACCACGCCGCGCCTCATCGGCGGCACGGCGGCGCTGCCGGAGTCCGTCTTCGGGAGGGAGATGAGGAGAGATTCCTcggcgacgacgacggcgacgacggcaacggcgTTCTTGAAGACCTACGGCGTGGAGGATTTGGGGAAGAAATTGAGGATGCTGAGGCCTGAGGGAAAGGGCAAGGATTGGTTTTCCGTTAGGGAATTGAGTGAGAGGTTGGTGAGGTTGAGGAAGATGGAGGAGGAACAAACGCGTTCCACTACTCGAGATGTTGTGGGTGATTCGGGTATATATGATGCGTTGCGAGGGTGTCTTACTGACATGGATCAAGACAAAGTTGACAACAATAAGAAAGCTTCACTGCAGGGACTTAGTATATTGAGCCACTTTGGTGGGACTCCAATATACTCTCTTGAGCCCCCTAAACCCCATCTTGTTGAAAAGTATTTTCATCCAGATAATATGTCCTCTGCTGAGAAGTTGAAAATTGAGCTTGCCAAGGTTAGAGATGAGTTTAAAATGTCGGAGTCGGATTGTGGCTCTGCTCGTGTTCAGATTGCAACACTCACAACTAAGATTAAGCATTTATCTGCCGTTCTACACAAGAAGGATGTTCATTCTCGTAAAGGTCTTATAGCAATGGTTCAGAGGAGAAAAAGATTACTGAAATACCTGAGAAGAACTGATTGGGATTCGTATTGTTTTGTTATCTCCAAGCTGGGTCTACGTGATAATCCTGATCATACTTATAGAGCAAGATCTGGTACGGCGGCATAG 1179 0.4385 MAILLRLRGRTRTRTRTRTEPSPTLFFSTNSNSGSNSNSPFSSLFKDIKAGLKNPQTSNPNFSLRAPHAASTHEIQKNLAEFRSRTAAPPPSGTPPPQVSFQELYNDRLQNPSKSRPANMDGIFQSLKSIKAKTPTTPRLIGGTAALPESVFGREMRRDSSATTTATTATAFLKTYGVEDLGKKLRMLRPEGKGKDWFSVRELSERLVRLRKMEEEQTRSTTRDVVGDSGIYDALRGCLTDMDQDKVDNNKKASLQGLSILSHFGGTPIYSLEPPKPHLVEKYFHPDNMSSAEKLKIELAKVRDEFKMSESDCGSARVQIATLTTKIKHLSAVLHKKDVHSRKGLIAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPDHTYRARSGTAA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00113 392 MobiDBLite consensus disorder prediction 1 72 - -
Cca11g00113 392 SMART Ribosomal_S15_2 299 377 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g00113 392 SUPERFAMILY S15/NS1 RNA-binding domain 299 378 IPR009068 -
Cca11g00113 392 MobiDBLite consensus disorder prediction 52 66 - -
Cca11g00113 392 MobiDBLite consensus disorder prediction 18 44 - -
Cca11g00113 392 Gene3D - 295 342 - -
Cca11g00113 392 Coils Coil 200 220 - -
Cca11g00113 392 Pfam Ribosomal protein S15 301 377 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g00113 392 CDD Ribosomal_S15p_S13e 301 375 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cca11g00113 392 PANTHER S15/NS1, RNA-BINDING PROTEIN 14 390 - -
Cca11g00113 392 TIGRFAM S15_bact: ribosomal protein uS15 300 377 IPR005290 GO:0003735|GO:0005840|GO:0006412
Cca11g00113 392 Gene3D - 344 379 - -
Cca11g00113 392 Hamap 30S ribosomal protein S15 [rpsO]. 289 378 IPR005290 GO:0003735|GO:0005840|GO:0006412
Cca11g00113 392 Coils Coil 292 312 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00113 - - ccaj:109818150 704.901