Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00111 ATGTCAGTGAAAGATTTTCCTGAAGAATGCTGGGAATTGGTCTTCAGATTCCTAGGCCATGGTCCTCATTTGGAGTCTCTATCTATGGTTTGCAAGCAGTTTCTGTCCATCACAAACCGGTTTCTATTCTCTCTGGCAATACATGATCCAACCATTCCACTTCTTCCTCGGCTATTCTTGAGGTTTCCAAGGCTCAAAACCTTAGACTTCACTCACTTCAACGGCCACCATGAAGGCTTGCTTCACCAAATTTCACAATCCGGGTTGGACCTTGATTTGATTAATCTATCCAACCAGAGAACACTTCCTGTTGATGGGCTGCGAGAACTTGGTTCAAAGATGCAAAATTTGAGGGTTCTGATCTGCTCAAACATTGGTTCTCTTCGCGATAGCCATCTAGTAGTCATGGCCTATTCTTTCCCATTTCTTGAAGAGCTTGACATAAGCTTCCCATTGGATTCTCAAGCATCAGATTTTGGGGTACAAAGGCTGTCTTCCTTGCTTGAGAATCTTCGCAAGATTAATATTTCTGAAGGTGGTGGTCTTATGCTAAAGAAGCTTATTCTCCAAGATTGTTGCAATTGTACATTTTCAGGAATCTCTTATGTGCTAACCAAATGCCAATCTGTTCAGTGCTTGGATCTTCGAAAAATTGATTTTTTAACTGATCAATGTATCAGTGAGTTATCGATGTTTCTTCTTAGTTTAACTTCTATAAACCTTAGTGGTTGTTGCCAGCTGACCAATTCAACATTTTTCATACTCACAAGAAACTGTCCTTTGCTCAGTGAGATCAAAATGGAGAGGACATATCTTGGGATGGAAGGGGAAGAAGATTCAATGAAGGATTTTGTTGTCAACCTTGAAGTCAAAAAAGTTTATTTGGGTGATAATGTTTTGCTGAGTGATGCAAGTTTGATAAAATTTGCTTCCATTTGCCCTAGTTTACAGCTTCTTGACTTAACCGGTTGTGAGGGTGTTTCTAGTGAATGTATTGTTAAGGTTTTAAAGAGATGCTGTGAGATAAGGCATTTGAACCTGGCCTATACAGGAATGGAAGTGTTTGAGATTGACTTTGAAGTATCTCAACTTGAGGTGTTGAACTTGTCAGGGTCAAGAATTGAGGATGAAGCACTCTCAATAATCTCAAGGAGATGTAGTGGACTACTACTTTTGAACATCCAGAGTTGTTGGCATGTTACACCAAAGGGTGTGAAGCAAGTAGTAGAAAACTGCAGGGCATTGAAAGAGTTGAATTTGAAGAATTGTTGGTTGGTGAGTGGTGATTTTATTGCTTGGGTGGAGTTTTCAAGGCCATCATTGAGAACAATAGTTACACCTTCTGATGTTGGTGCTTATTGA 1362 0.3987 MSVKDFPEECWELVFRFLGHGPHLESLSMVCKQFLSITNRFLFSLAIHDPTIPLLPRLFLRFPRLKTLDFTHFNGHHEGLLHQISQSGLDLDLINLSNQRTLPVDGLRELGSKMQNLRVLICSNIGSLRDSHLVVMAYSFPFLEELDISFPLDSQASDFGVQRLSSLLENLRKINISEGGGLMLKKLILQDCCNCTFSGISYVLTKCQSVQCLDLRKIDFLTDQCISELSMFLLSLTSINLSGCCQLTNSTFFILTRNCPLLSEIKMERTYLGMEGEEDSMKDFVVNLEVKKVYLGDNVLLSDASLIKFASICPSLQLLDLTGCEGVSSECIVKVLKRCCEIRHLNLAYTGMEVFEIDFEVSQLEVLNLSGSRIEDEALSIISRRCSGLLLLNIQSCWHVTPKGVKQVVENCRALKELNLKNCWLVSGDFIAWVEFSRPSLRTIVTPSDVGAY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00111 453 Gene3D Ribonuclease Inhibitor 354 446 IPR032675 -
Cca11g00111 453 Gene3D Ribonuclease Inhibitor 278 353 IPR032675 -
Cca11g00111 453 SUPERFAMILY RNI-like 187 444 - -
Cca11g00111 453 SMART LRR_CC_2 233 258 IPR006553 -
Cca11g00111 453 SMART LRR_CC_2 361 385 IPR006553 -
Cca11g00111 453 SMART LRR_CC_2 140 167 IPR006553 -
Cca11g00111 453 SMART LRR_CC_2 313 338 IPR006553 -
Cca11g00111 453 SMART LRR_CC_2 386 411 IPR006553 -
Cca11g00111 453 SUPERFAMILY RNI-like 17 177 - -
Cca11g00111 453 PANTHER UNCHARACTERIZED 5 438 - -
Cca11g00111 453 PANTHER NODULIN-LIKE PROTEIN 5 438 - -
Cca11g00111 453 Gene3D Ribonuclease Inhibitor 1 181 IPR032675 -
Cca11g00111 453 Gene3D Ribonuclease Inhibitor 182 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00111 Cca-Chr11 1228962 1230626 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00111 K10268 - gmx:100820070 498.434