Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00110 ATGGACTACTTCCCTTTCCTCGAACACCTCGACCTCAGTTTCCCCGACAACTCCTCCGACCCTGTCTCCGACTCCGCCGTCGAGGCTCTCTCCTTGGGCCTCCCCAACCTTCGCAGGGTTAACCTCTCTGGTAATTTCTTCATCCACGACCCTTCCATTCTCAGCCTCTGCAAAAACTGCCAATTTCTCGAGGAACTCGTCATCTTCGAGTGCCACTTCATCACGCAACGTGGCATCGCCTCCGCGATTCGTGAAAGGCCTTGTGTGAGTTCTCTCTGTGTTAGCAACTTCGGGTGCGGGGCCAAAAAAGGGGACTTTTTTAGACCCCATGTGACTTCCGATTTCATTGAAGCGTTGGTGGGCTTAAAGGGGTTGACTTGCCTCGATTTGTCGTTCTCCTCGATCTCCGACGAGTTGCTATGTTGTGTCGCGGAGGAGGGGATTCCTCTGAGGAAGCTTGTTTTGCAAGGTTGTTGTAATTATAGTTATGTTGGGGTGCTGTGTTTGTTGTCCACGTGTCGGTTTGTGGAGCATTTGGATCTTCAGAATGCTGAGTTTTTGTGCGATCAGCGTGTGGAGGAGTTGTGTGCGTTTCTTGGTAATTTGGTGTATATAGATGTTAGTGGTTGTAGGATGGTGACTGATTCGGCATTGTTGGCACTTGCTAGGAATTGTCCTTTGTTGAATGAGGTCAGAATGGGGGCTACAGATGTTGGTAAAAGGAAGGTTGACGATGATGCTTTGGTGAGTGGTGTTGTGAATTATCAAGTGAAGTCTCTATATTTGGGAAACAATTCGTGGTTGAGGGATGAGAGTGTTGAAATGTTTGCTTCTGTTTTCCCTAGTTTGGAGGTGCTTGATTTGAGCTCTTGTTGTGGTGTATATGAAGGTGTTGTTGAGGTTTTAAGGAGGTGTACTGAGGTAAGGCATTTGAGTTTGGCCTTTTGTTCAGGAGTGAGGTTAACTGGTTTGAACTTTGAAGTTCGCAAACTTGAGGAGTTGAACTTGTCACGGTCAGGGATTGATGATGAGGCGCTTTCTGTGATCTCAAAATGTTGTCGTTGGCTGCTGCAGTTGGACTTGGAAAATTGCTCTCGTGTTACGGCAAAGGGAGTGAGGCAAATGGTGGAGAATTGCACGCAATTGAGAGAGATAAGTTTGGTGTCTTGTTATGAAGTGGAAGCTAGTATTGTTGCTTGGATGGTATTTTCAAGGCCTTCATTGAGAAGGATAATGGCTCCCCCTAGGTTTGATCTCAGTGATGGCCAGAGAGAACTCTTCTTGCGACATGGATGCCTTGTTTGTTAA 1308 0.4694 MDYFPFLEHLDLSFPDNSSDPVSDSAVEALSLGLPNLRRVNLSGNFFIHDPSILSLCKNCQFLEELVIFECHFITQRGIASAIRERPCVSSLCVSNFGCGAKKGDFFRPHVTSDFIEALVGLKGLTCLDLSFSSISDELLCCVAEEGIPLRKLVLQGCCNYSYVGVLCLLSTCRFVEHLDLQNAEFLCDQRVEELCAFLGNLVYIDVSGCRMVTDSALLALARNCPLLNEVRMGATDVGKRKVDDDALVSGVVNYQVKSLYLGNNSWLRDESVEMFASVFPSLEVLDLSSCCGVYEGVVEVLRRCTEVRHLSLAFCSGVRLTGLNFEVRKLEELNLSRSGIDDEALSVISKCCRWLLQLDLENCSRVTAKGVRQMVENCTQLREISLVSCYEVEASIVAWMVFSRPSLRRIMAPPRFDLSDGQRELFLRHGCLVC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00110 435 Pfam Leucine Rich Repeat 36 52 IPR001611 GO:0005515
Cca11g00110 435 SUPERFAMILY RNI-like 4 400 - -
Cca11g00110 435 Gene3D Ribonuclease Inhibitor 1 252 IPR032675 -
Cca11g00110 435 Gene3D Ribonuclease Inhibitor 253 323 IPR032675 -
Cca11g00110 435 SMART LRR_CC_2 199 224 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 379 403 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 60 85 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 280 304 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 328 352 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 4 33 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 353 378 IPR006553 -
Cca11g00110 435 SMART LRR_CC_2 34 59 IPR006553 -
Cca11g00110 435 Gene3D Ribonuclease Inhibitor 324 412 IPR032675 -
Cca11g00110 435 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 6 410 - -
Cca11g00110 435 Pfam Leucine Rich repeat 329 349 IPR001611 GO:0005515
Cca11g00110 435 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 6 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00110 Cca-Chr11 1224998 1226400 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00110 K10268 - gmx:100819538 707.597