Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00104 ATGCGACGCTCTGCGGCCAAGAAGACGGGTCAATCCAATTCCACTCCCAACGCCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAACGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACGCTTTGTGCTGATATGGAGGTGGATCATACAGATGTGAGGGTCTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCTGATACAGTGAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCTGATTTCTATTCTTATGCTTTCCAATACTGTTTAACAGAGGAGAAACAGAAAAGCATTGACATAGAGAGCATTTGTGAATTACTTACTCTTGTTTTGGGTTCAACATTTCCTGCACAAGTCAGCTCATTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCGACCTTTAATGACTATGATCCTGAACTTGCCTGGCCCTTGATCCTGGATAATTTCGTTGATTGGGTGCAAGAAAAGCAAAAATAA 687 0.4265 MRRSAAKKTGQSNSTPNAAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVSSFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTFNDYDPELAWPLILDNFVDWVQEKQK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00104 228 PANTHER RP42 RELATED 1 227 IPR014764 -
Cca11g00104 228 SUPERFAMILY EF-hand 28 207 IPR011992 -
Cca11g00104 228 Gene3D - 31 121 - -
Cca11g00104 228 ProSiteProfiles DCUN1 domain profile. 33 224 IPR005176 -
Cca11g00104 228 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 1 227 - -
Cca11g00104 228 Pfam Cullin binding 108 222 IPR005176 -
Cca11g00104 228 Gene3D Cullin, PONY binding domain 123 228 IPR042460 -
Cca11g00104 228 MobiDBLite consensus disorder prediction 7 29 - -
Cca11g00104 228 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00104 Cca-Chr11 1156427 1161378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00104 K17824 - gmx:100776788 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00104 11 1156427 1161378 Cca11g00104 11 1156427 1161378 ECH