Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00103 ATGCTGTGCAGGAAGAGCTCCAAAAACGGCGTCGCTTCGGGAACCGTGCCGGTGTACCTCAATGTCTACGATCTAACACCCATGAACGGTTACGCTTACTGGTTCGGGCTCGGAGTGTACCATTCCGGCGTTGAAGTTCACGGCGTTGAGTTCGCGTTCGGAGCTCACGAATTTTCCTCGACGGGGATATTCGAAGGTGAACCTAAGAAGTGCGAAGGTTTCACGTTCAGAAAAACGATTCTGATCGGAAAAACCGATATGGGGCCCGGTGAGGTTAGCACTGTGATGGAAAATCTCGCTGCTGAGTACAGAGGGAATGCTTACAATCTCATAACGAAGAATTGCAACCATTTTTGCAACGATGCTTGTATTAGACTCACCGGAAATCCTATTCCGAGTTGGGTCAATCGTCTTGCACGAATTGGATTTATGTGCAACTGTGTTCTTCCTGTGAAATTGAACTCAACAAAAGTGAGGCACCACAGGATAGAGGAGAAGCAATGTGAAGGAGATAAGGAAGCGTTAAAAAATGATGCAAGGAAGCTTAGTGGTTCAAAATCAACATCTTCGGCAACATCTTCCCCTGCGGGAGGGCGCAGGGGAAGGAGTAGAACAAGACGTGCCCTTCCTCCATCTTCTCCTTTGATTATTGGATCAAGATCTTAa 666 0.4745 MLCRKSSKNGVASGTVPVYLNVYDLTPMNGYAYWFGLGVYHSGVEVHGVEFAFGAHEFSSTGIFEGEPKKCEGFTFRKTILIGKTDMGPGEVSTVMENLAAEYRGNAYNLITKNCNHFCNDACIRLTGNPIPSWVNRLARIGFMCNCVLPVKLNSTKVRHHRIEEKQCEGDKEALKNDARKLSGSKSTSSATSSPAGGRRGRSRTRRALPPSSPLIIGSRS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00103 221 SMART DUF862_2a 16 154 IPR008580 GO:0008233
Cca11g00103 221 Pfam PPPDE putative peptidase domain 17 150 IPR008580 GO:0008233
Cca11g00103 221 MobiDBLite consensus disorder prediction 181 199 - -
Cca11g00103 221 MobiDBLite consensus disorder prediction 170 221 - -
Cca11g00103 221 Gene3D PPPDE domains 12 169 IPR042266 -
Cca11g00103 221 PANTHER DESUMOYLATING ISOPEPTIDASE 5 221 IPR008580 GO:0008233
Cca11g00103 221 PANTHER F23A5.4 PROTEIN 5 221 - -
Cca11g00103 221 ProSiteProfiles PPPDE domain profile. 16 153 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00103 Cca-Chr11 1144942 1146649 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00103 K22763 - gmx:100817929 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00103 11 1144942 1146649 Cca11g00103 11 1144942 1146649 ECH