Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00098 ATGGAGGTGCCGAGTTCCTGGGATGCCCTTCGCAAACAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAGATGAATTCTTATCGTAAATTGGTTTCAGCTAATGTTTCTACAAAAGCTGACACTGCAGGGAGTGATCTAGAATCTTGGATCGAGCGATTAATAAAACAACTCCAACATGTAAACTCACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACATCAAGAAATTCTTCAAGATCTTACCCAGGAGTTTTATCGGCTTCGCTCAAGTCTTATAGCTAAGCAAGAACATGCTTCACTGCTAGAGGATTTTAAAGAATTTGATCGGACAAGATTAGATTTGGAACAGGGTGTAGACTCTGAACAGCATGCACTCCTAAAAGAGCGTGCATCTATCAGCCGAAATACAGGACATATGGACACTGTTATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCAACATTTGGTGGCATCAATTCAAAGCTTGGTAACGTGAGCAGTCGGCTCCCGACGGTAAATAACATACTTTCTGCAATAAAGAGGAAAAAGTCAATGGATACCATTATACTTTCCCTAGTTGCAGCCGTATGCACATTTCTTATTTTCATCTACTGGCTATCCAAGTGA 675 0.4148 MEVPSSWDALRKQARKLEAQLDEQMNSYRKLVSANVSTKADTAGSDLESWIERLIKQLQHVNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLIAKQEHASLLEDFKEFDRTRLDLEQGVDSEQHALLKERASISRNTGHMDTVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNNILSAIKRKKSMDTIILSLVAAVCTFLIFIYWLSK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00098 224 PANTHER GOS-28 SNARE- RELATED 1 224 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016021
Cca11g00098 224 PANTHER GOLGI SNAP RECEPTOR COMPLEX MEMBER 1 1 224 - -
Cca11g00098 224 Pfam Snare region anchored in the vesicle membrane C-terminus 135 199 - -
Cca11g00098 224 PIRSF Golgi_SNARE 1 223 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016021
Cca11g00098 224 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00098 Cca-Chr11 1104967 1109859 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00098 K08495 - gmx:100797885 406.371