Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00095 ATGGACTACAGCTCTGAAGAAGACTCAGATATCAGTGAATCTGAGATTGATGACTACTCAGAGAAACCATATGAACAGTTAAAGGCTGGGAAATACAAGGTTAAAAATTTGAATGGAACTCTTAGATGTCCCTACTGTGCTGGGAAGAAAAAACAAGATTACAAATATAAGGATTTATTGCAACATGCATCAGGAGTTGGTAAGGGTTCTGCCAACAGAAGTGCAAAACAAAAGGCAAACCACCTTGCTCTAGCAAAGTACTTGGAGACTGACCTAGCTAGTGAAGCAGATCCAATCCAGCGACCAGCTTTACCCCAAGCTGTTAATCAACCTTTACAGCAAGATGATCTTTATGTTTGGCCCTGGACAGGCATAATTGTTAACATAAAGGATAAATCGATCGATTCTGGATATTGGTTGAAGGAATTTGCCAAATTCAAACCAATGGATTTTCATATATTCTTGAAAGATGGTGATCTCATTGCTCAAGCTGTTATTGACTTCAATTGTGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAGTCATTTGAAAATGCACGTCATGGTAAAAAGGCTTGGAATTCAAGGAAGTCAGAGGCTGGCTCAAACATTTATGGATGGATTGCGCGGGAAGATGATTATAATTGTGGAGGACCAATAGGGGAATACCTCCGCAACAAAGGAAGGTTGAGGACAGTTTCAGATATTGTTCAAGAAGAATCTCAAAGCAGAAATAGTATTGTGACAAACCTAACTCATGAAATTGAGATTACAAACGAAAACCTTGACAAAATGCAGTATAAGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTTGAGGAGAAAGATAAGATTCACAATGCTTTTGATGAAGAATCAAGGAATATGCAGCGAAGAGCTCGTAATGAGGTACGGAGGATCTTGGATGAACAAGAAAAATTGAGTAGTGAATTGGAGAAAAAAAGGCGCAAGCTTGACTCCTGGAGTAGAGATCTAAACAAACGAGAGGTACTAACTGATCAAGAGAGACAGAAGCTTGAAGAAGAAAGGAAGAAGAAAGATTTGAGGAATGAATCACTCCTGTTGGCTTCAAAGGACAAGGAGATAGCTGATCAAAATGTCTTGAAGCTTGTTGAGGAGCAAAAGAGAGAAAAACAGGAGGCCTATGACAAGATAATTCAGTTGAAAAAACAGTTAGACGCCAAACAGATGTTGGAAATGGAAATTGAAGAGTTAAGAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATGCAGCTGTGCAGAATAAGATAAAAGAAATGAATGATGAACTGCAAGAAAAAGTAGACAATTTGGAAAATATGGAGGCCATGAATCAAACCCTCATTGTGAAGGAGCGTCAGAGTAATGATGAACTGCAGGAAGCTCGTAAAGAATTAATAAAAGGGTTAGATGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGCATTTTGTGAATATCTGCAAGAAAAGATTTCCTTCTGGAGAAGCTGAGACCAAGGGTGTTGAGCTTTGCTCTTTGTGGCAGGAGAATGTGAAGAATTCAGCTTGGCATCCATTTAAAGTGATCACAGATGATGATAAAGTTGAGAATATTATAGATGAGGAAGATGACAAGTTACAAAGCCTCAAGCAGGAATGGGGAGATGAGATACATTCAGCTGTTGTTGAAGCCTTGAAGGAAATAAACGAATACAATGCAAGCGCGCAAGAGAGCTTAGGTAAAAAGGTGACAAATGCATGA 1812 0.3891 MDYSSEEDSDISESEIDDYSEKPYEQLKAGKYKVKNLNGTLRCPYCAGKKKQDYKYKDLLQHASGVGKGSANRSAKQKANHLALAKYLETDLASEADPIQRPALPQAVNQPLQQDDLYVWPWTGIIVNIKDKSIDSGYWLKEFAKFKPMDFHIFLKDGDLIAQAVIDFNCDWNGFMNASEFEKSFENARHGKKAWNSRKSEAGSNIYGWIAREDDYNCGGPIGEYLRNKGRLRTVSDIVQEESQSRNSIVTNLTHEIEITNENLDKMQYKYNEKTMSLSRMLEEKDKIHNAFDEESRNMQRRARNEVRRILDEQEKLSSELEKKRRKLDSWSRDLNKREVLTDQERQKLEEERKKKDLRNESLLLASKDKEIADQNVLKLVEEQKREKQEAYDKIIQLKKQLDAKQMLEMEIEELRGKLQVMKHLGDEDDAAVQNKIKEMNDELQEKVDNLENMEAMNQTLIVKERQSNDELQEARKELIKGLDDMLNGPRTNIGLKRMGELDQKHFVNICKKRFPSGEAETKGVELCSLWQENVKNSAWHPFKVITDDDKVENIIDEEDDKLQSLKQEWGDEIHSAVVEALKEINEYNASAQESLGKKVTNA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00095 603 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g00095 603 Coils Coil 300 334 - -
Cca11g00095 603 Pfam XS zinc finger domain 43 85 IPR005381 GO:0031047
Cca11g00095 603 Coils Coil 378 425 - -
Cca11g00095 603 PANTHER FACTOR OF DNA METHYLATION 1-RELATED 4 593 - -
Cca11g00095 603 Coils Coil 549 569 - -
Cca11g00095 603 PANTHER RIBONUCLEASE P SUBUNIT P38 4 593 IPR045177 GO:0080188
Cca11g00095 603 Coils Coil 430 478 - -
Cca11g00095 603 Coils Coil 341 366 - -
Cca11g00095 603 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00095 603 Pfam XS domain 115 217 IPR005380 GO:0031047
Cca11g00095 603 Pfam XH domain 497 595 IPR005379 -
Cca11g00095 603 Gene3D XS domain 111 272 IPR038588 -
Cca11g00095 603 CDD RRM_like_XS 118 216 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00095 Cca-Chr11 1063666 1067826 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00095 - - gmx:100798940 1028.08