Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00093 ATGCCGCTGATTTTGGCGAAAAGCGACTCGATCGAGATTCGCGAGGTGTGGAACGATAACCTGGAAGAGGAGTTCGCGTTGATCCGGGAAATCGTGGACGATTACCCGTACATCGCGATGGACACGGAGTTTCCGGGAATCGTTCTCCGACCGGTGGGGAATTTCAAGAACAGCTACGACTACCATTACCAAACCCTAAAGGACAACGTGGACATGCTCAAGCTCATCCAATTGGGCCTCACCTTCTCCGACGAGCACGGCAACCTCCCCACGTGCGGCCCCGCCCACACGTGCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAACGAGGACGTCTTCGCCAACGACTCCATCGAGCTTCTCCGCCAGAGCGGCATCGATTTCACCAAGAACAACCAAAACGGCATCGACGCCCGTCGTTTCGGGGAGCTCCTCATGTCCTCCGGCATCGTTTTGAACGACAACATCCATTGGGTAACTTTCCACAGCGGCTACGATTTCGGCTACTTGCTCAAGCTTTTGACTTGTCAGAATTTGCCTGATACGCAAGTCGGGTTCTTCAACTTGATCAACATGTACTTCCCCACCGTCTACGACATCAAGCACCTTATGAAGTTCTGCAATAGCCTCCATGGCGGCTTGAACAAGCTCGCCGAGCTCTTGGAGGTTGAGAGGGTTGGGATTTGCCACCAGGCTGGTTCCGACAGTTTGCTCACTTCATGTACATTCAGGAAATTGAAGGACAATTTCTTTAGTGGCTCCTTGGAGAAGTATGCCGGCGTCTTGTATGGGTTAGGTGTTGAGAATGGACAGGGTTCTTATTGA 831 0.5235 MPLILAKSDSIEIREVWNDNLEEEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSYDYHYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGPAHTCCIWQFNFREFNVNEDVFANDSIELLRQSGIDFTKNNQNGIDARRFGELLMSSGIVLNDNIHWVTFHSGYDFGYLLKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKDNFFSGSLEKYAGVLYGLGVENGQGSY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00093 276 Pfam CAF1 family ribonuclease 16 138 IPR006941 -
Cca11g00093 276 SUPERFAMILY Ribonuclease H-like 4 269 IPR012337 -
Cca11g00093 276 Gene3D - 1 271 IPR036397 GO:0003676
Cca11g00093 276 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 274 IPR039637 GO:0004535|GO:0030014
Cca11g00093 276 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 4 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00093 Cca-Chr11 1043619 1045205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00093 K12581 - gmx:100789409 550.051