Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00091 ATGAGTTCTCTTCCTGACACAGCGAAGATGCTGAAGCGAGTGGGGAGGAAGCTTCTCCAGTCTCCCTCCGGTGATGATCTTCGAGAACTTCTTCATAAATTGGAGCTTCTATTATCAACTGTGGATCAAGATCCAGCCAAGCCAATTCAAGAATCACTTGTACCTTCAATGAAGGCATTGATTTCCGATGAACTTTTGAGGCACACAGATGATGATGTTAAGCTTTCGGTTACATCTTGCCTCACTGAGATTACAAGAATCACGGCGCCAGATGTCCCTTATGATGATGAACAAATGAAGGAAATCTTCAAGCTCACAGTGGCATCTTTCAAGAAATTGTCTCACATATCAGGCCATGGCTATGAAAAAGCACTTACCATACTTGATAATGTCAATAAGGTCAGATTATGCTTGGTCATGCTGGACCTTGAGTGTAATGACCTGGTTATTGAAATGTTTCAGCAATTCTTGAGATTTATAAGGTCAAACCATCCCTGTAATGCAATTCATTCAATGGAAACCATAATGACCCTGATCTTGCAAGAAAGTGAGCAAATTTCCTCAGATCTTCTCAGACCTCTATTGGAAAGTGCAGCCAATGAAAATCAGACTATTTCACCTATTTCTTGGACAATGGCGGAAAAAATAATTAGCAATTGTGCTATCAAGCTCAAGCCTTTTCTCATGAAGGCAGTGGAGTCCTCAGGCAGGGCTTTAAATGAGTATGCACATATAGTAGCTAGTATTTGCCAGAATGAGTCTGATACCCCTAAATGCGATGATTCAAATTGTTCTAAGAAAACAATGGTTCATGAAGCTGAGAACAAGCTTGATGTTCCTAAAGATGCAGAGGAACAATCATGTGATGCAACCAAGAGGCAAGAACCAGATATTACTGGTGAGAGAGATGTCCAAATCTTGGATGCTACAAAGTCAAACGTAAGAAGTGCCAGTCCTTCTACTATGAATGACGAAGCTATAAAAATATCTGGTTCAAAAAGGAAACCACATTCTGAAATTACGAAGAATTCCAAAGCAGAAAATGCCAAAGCCAATTTGGAAACCGACAATGCAGAGTCTGTTCAGGAACCAACATCAGAAACTCAGCTGAATACAGTACCAAAAAAGAGGGGCCGTAAGCCTAATTCTCTAATGAACGAAGAGGAAGGCTATGACCACTCATGGATTTTTCGGGAAACAAAACCTGGGAAATCAGCTCTATCCAGAAAAGCTCGCAATTGTAGTTCTGCTTTTCCGTCTTCTGAAAAACCTGTTTCCAGAAAGGATAAGTTGCATCAAAAGCCTAAAACTGTAAGTGAAGCTATAGTTTCTAAGACAAAAAGTGAGAACATAAAACCTGCCCAATCCATAAGGACTCACAATATTGGCAGTGATTTTCCACCTAATGATAACCCTGCTTCCTTCAAGGATGGTGTGATGTCAAAGCCTGAAGATACAAGCAAAGGTTGTGAAGCTTTAGCTTCTAAACCTAAAACTGATGAGAATACTGATGCTGCTCCTTCTTTAAATAATAAAATTCCTGATGGATGTTGCATCAATCAAGATGTTCACTCTAATTCTGTGTCAATGTTAAAGGAAGACAACTTGAATCCTCTGCCCGAGGATACTTCTTTGGATTCCCCAGCAGTTAGGTTGGAAAAGGAATCTGAAGTAAGGAAGGATTCTGAACTAAAACCTGCTAAGAAAATCAAACTTTCTATAAAGTTTGGTGGGAAAACTGCTGTGGCTTCAGATACGGTAGTTGCTAAGATGGAACCTAATGTTTCTTGTGGAGATGAGGGGAAACATGAGTCATCTATGAATGTTGAGCTAGAAAATAAAGAAGAGGGAACATCATCTGCTCAAACAGTTATTAAGAAAAGGAGGAGGGGAGATGCTACTTCTAATAAGGGTCTCAACAAATCATCCGTTGTGAAGGAGCTGATTGCTGAATCTGCAAGTAAAACATTAAGTGGCTTCAAGGAAACCCCACAAACAAAGCGGAGGGGAAGACACATTACTTTGAGTGCAAAGGCATCTCAATCTTATGATGGTAACCCATTGGTTGGTAGTAGGATCAAGGTTTGGTGGCCGAAGGATAAAAAGTTTTACGAAGGCGTTATCAATTCTTTTAATCCTATCAAAGGAAAGCACAAGATTTTGTATACTGATGGTGATATTGAAGTGTTGAACCTCAGAAAACAGCGCTGGCAACTAGTTTCTGTTGATGATTCATTAAATGAGGAAGGACTTCCACTTCAGAAGGTTGCAGAAGCATCAAACATATCAGAAAAAGGCACAGAAAAATCCAAATTGGAGTCGGCCAAGGGTGCAAATATCAATTCTCAGTCCAGGGGAAGAGCTTCTGCCCGCAACTTCAAATCTGAATCTGCAGAATCTGCTGCCAAATCTGTGGATACTTCTGCTGTTAACAGATATGCTTTGGCTGATGAATCCATTGATGACTCTGCAAGGAAGCCTAAAACCAAAAGAATGAAAACTGGTTCAGACACAAAAAAGAACAAACTTAGGACTGAGGACCTTGAAAAGGAAAAAAGTGTAAGTGGCTTGAATTCTGCTGTAGGAAATGTGTCTAGAAAATGA 2604 0.4005 MSSLPDTAKMLKRVGRKLLQSPSGDDLRELLHKLELLLSTVDQDPAKPIQESLVPSMKALISDELLRHTDDDVKLSVTSCLTEITRITAPDVPYDDEQMKEIFKLTVASFKKLSHISGHGYEKALTILDNVNKVRLCLVMLDLECNDLVIEMFQQFLRFIRSNHPCNAIHSMETIMTLILQESEQISSDLLRPLLESAANENQTISPISWTMAEKIISNCAIKLKPFLMKAVESSGRALNEYAHIVASICQNESDTPKCDDSNCSKKTMVHEAENKLDVPKDAEEQSCDATKRQEPDITGERDVQILDATKSNVRSASPSTMNDEAIKISGSKRKPHSEITKNSKAENAKANLETDNAESVQEPTSETQLNTVPKKRGRKPNSLMNEEEGYDHSWIFRETKPGKSALSRKARNCSSAFPSSEKPVSRKDKLHQKPKTVSEAIVSKTKSENIKPAQSIRTHNIGSDFPPNDNPASFKDGVMSKPEDTSKGCEALASKPKTDENTDAAPSLNNKIPDGCCINQDVHSNSVSMLKEDNLNPLPEDTSLDSPAVRLEKESEVRKDSELKPAKKIKLSIKFGGKTAVASDTVVAKMEPNVSCGDEGKHESSMNVELENKEEGTSSAQTVIKKRRRGDATSNKGLNKSSVVKELIAESASKTLSGFKETPQTKRRGRHITLSAKASQSYDGNPLVGSRIKVWWPKDKKFYEGVINSFNPIKGKHKILYTDGDIEVLNLRKQRWQLVSVDDSLNEEGLPLQKVAEASNISEKGTEKSKLESAKGANINSQSRGRASARNFKSESAESAAKSVDTSAVNRYALADESIDDSARKPKTKRMKTGSDTKKNKLRTEDLEKEKSVSGLNSAVGNVSRK 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00091 867 MobiDBLite consensus disorder prediction 594 639 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 439 468 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 313 388 - -
Cca11g00091 867 Gene3D - 681 736 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 547 561 - -
Cca11g00091 867 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 9 851 IPR039776 GO:0007064
Cca11g00091 867 Coils Coil 343 363 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 345 376 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 533 561 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 621 635 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 818 853 - -
Cca11g00091 867 Pfam Sister chromatid cohesion protein PDS5 protein 25 228 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 774 807 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 313 327 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 596 611 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 275 300 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 403 515 - -
Cca11g00091 867 PANTHER SISTER CHROMATID COHESION PDS5-LIKE PROTEIN 9 851 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 481 498 - -
Cca11g00091 867 SUPERFAMILY Tudor/PWWP/MBT 687 726 - -
Cca11g00091 867 MobiDBLite consensus disorder prediction 328 344 - -
Cca11g00091 867 SUPERFAMILY ARM repeat 17 228 IPR016024 -
Cca11g00091 867 MobiDBLite consensus disorder prediction 762 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00091 Cca-Chr11 1013592 1024679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00091 - - gmx:100812058 1064.68