Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00082 ATGTTGGGCCCACCCAGAGTCCGATCCATGAACGTGGCCGCCGGCGACGCTGAGGCGCGGCCGGTACTCGTTCCCGCCGGCAACAAAGCTCGCCCCGTCGAGGGACGGAAGCCGGCTAAGAAATCTCCGCCGCCGGAGACGGAGAAGAAGCCGGTGGCGCATTCCGCGCCGCAATGCGTCTCTGCACCGCCGGCGATTTCGCGGCGGCGGGATCAGCAGCACCAGGCTGTGCTGAAAAACGTGTCGATGAACGCCTCGTGCTCCTCCGACGCGTCGTCGACGGATTCCTCCACCCACAGCAgcggcgcgtcgtcgagcgggaaggcggcgcggcgcgtcgttgtggcggcgaggAAGAAGTATGGCGGTGGTCCGAAGCCGGAGAAGGTGAGTGGTGACAATGTGGGTGGTTCTGATGATGTTGATTTGAGTGATAGCTTGGAGGGCAAGAAAAGGTGTGCTTGGGTTACACCTAATACAGAGCCATGTTATATTGCTTTTCATGACGAAGAGTGGGGAGTTTCTGTTCATGATGACAGGAAACTGTTTGAGTTGCTTAGCTTCTCTGGAGCCTTGGCTGAGCTTACGTGGCCTACTATTCTTAGCAAAAGGCAGTTATTTCGGGAAGTCTTTTTGGATTTTGATCCAAGTGCTGTTTCACGAATGAATGAGAAAAAGATAGTTGGACCAGGAAGTCCTGCCAACACATTGCTATCAGAGCTCAGGTTGCGATCCATAATTGAAAATGCACGACAGATGTGTAAGGTAATTGAAGAGTTTGGGTCCTTTGACGCATATATTTGGAACTTTGTGAACAATAAGCCTATAGTGAGCCAGTTCAGGTACCCTCGCCAGGTACCTGTCAAATCTCCAAAAGCAGAAGTTATAAGTAAAGACCTTGTAAGGAGAGGATTCAGGAGTGTTGGTCCAACAGTCATCTATACTTTCATGCAAGTGGCTGGCCTAACATTTGACCACCTCATTAGTTGCTTCAGATTCAAGGAGTGTACCTCCAATGCAGAAGCAATGGTCAAAGAGAGCACCCTCAACTCGAAGGAGGTGGATCTGTTGCTGGCTGTGAACAAATTGAGCTTCACCTCTAAGTAG 1107 0.4833 MLGPPRVRSMNVAAGDAEARPVLVPAGNKARPVEGRKPAKKSPPPETEKKPVAHSAPQCVSAPPAISRRRDQQHQAVLKNVSMNASCSSDASSTDSSTHSSGASSSGKAARRVVVAARKKYGGGPKPEKVSGDNVGGSDDVDLSDSLEGKKRCAWVTPNTEPCYIAFHDEEWGVSVHDDRKLFELLSFSGALAELTWPTILSKRQLFREVFLDFDPSAVSRMNEKKIVGPGSPANTLLSELRLRSIIENARQMCKVIEEFGSFDAYIWNFVNNKPIVSQFRYPRQVPVKSPKAEVISKDLVRRGFRSVGPTVIYTFMQVAGLTFDHLISCFRFKECTSNAEAMVKESTLNSKEVDLLLAVNKLSFTSK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00082 368 MobiDBLite consensus disorder prediction 76 107 - -
Cca11g00082 368 SUPERFAMILY DNA-glycosylase 151 336 IPR011257 GO:0003824|GO:0006281
Cca11g00082 368 Pfam Methyladenine glycosylase 159 332 IPR005019 GO:0006284|GO:0008725
Cca11g00082 368 Gene3D Hypothetical protein; domain 2 150 333 - -
Cca11g00082 368 MobiDBLite consensus disorder prediction 33 48 - -
Cca11g00082 368 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE I 1 367 - -
Cca11g00082 368 MobiDBLite consensus disorder prediction 1 140 - -
Cca11g00082 368 PANTHER OS04G0501200 PROTEIN 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00082 Cca-Chr11 894404 898737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00082 K01246 - gmx:100805836 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00082 11 894404 898737 Cca11g00082 11 894404 898737 ECH