LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00081	ATGGGACCCACTTATCCAACGCTTTTCCACACAAACTTTGAAATATATCATCAGTTCATTCGGTGCAAGCATGGCAAAAGAGAAGCAACTTTGAAAACCTCAATGGCTGCTGCAACTTACTATATACTGCCAAGTCCAAAAACTCTCTCACCCCTCTTCAGAAACCCTCCTTCCATTATTCCTTCCAGCAATGTTTCACTGTTGGGTTCATTAGACTATTCATTCTATTGTTCCACAAGGAGAGGGAACGTTGAGGCCAATGCCAAAAAGAAAAACCCTTGGTTGGACCCTTTTGATGATGGGGAGGACCCTGACATGGAGTATGGATCATTGTTTACAGATGGGAAGCAGGAGGAGGATCTTAGGCCACCTGATGATCCTGACAACCCATATGGATTCCTGAAGTTCCCATCTGGATATTCAGTGGAGATAGCCTCTTTGGCATTGAAAGTGAGAGGGGATGTGAGGAGATGCTGCTGCGTAATCTCTGGTGGTGTTTATGAGAACCTCTTGTTCTTTCCGGCTATTCAGATGATCAAGGATAAGTATCCTGGTGTTCAGATTGACGTGGTGGCGTCAGAGAGGGGCAAGCAGACCTACGAATTGAATAAGAATGTGAGGTGGGCAAATGCCTATGACCCTGATGATGACTTTCCAGAGCCTGCTGAGTATACTGATATGGTTGGAGTGCTAAAGAATAGGTATTATGACATGGTCTTAAGCACCAAATTGGCAGGCCTAGGACATGCAGTTTTTTTGTTTATGACAACTGCCCGAGATAGAGTTAGTTATGTCTACCCAAATGTGAATGCTGCTGGAGCTGGATTGCTTCTATCCGAAACATTCGTAGCCGATAATTTAAATCTCTCAGATGGAGGATATCATATGTATCATCAGATGGTTGACTGGCTGGGAAGACCATTTAGAAACGTTCCAAGTCAGCCAGTGCCACCACTTAAGGTATCAATCTCAAGGAAGCTGAAGGAGGTTGTGGAAGCAAAATACGAAAAAGCAGGTGTAAAAAAGGGACAATTTGTTGTAATTCATGGGATAAAATCAGATTCAAAGGCTTCCATGCAGTCTAGGGGTGATCCAGATAGCTTGCTACCCATTGAAGTGTGGGCTGAAATTGCTGATGCTGTAAGGGATTTTACGCCGCTTTTTGTCATTCCACATGAAAAGGAAAGGGAAAATGTGGAGGAAATATATGATGAAGAAGCCTCTATAGTCTTCATCACCACCCCTGGCCAGTTGGCTGCTCTTATTAATGACTCAGCTGGAGTGATAGCTACAAATACAGCTGCCGTTCAGCTTGCAAATGCACGCGAGAAGCCTTGTATTGCACTATTTTCCTCTGAAGATAAGGGAAAGAAGTTTGTCCCGCAGGATGAAGAGAATAAATGCATTGAAATATCATCCAAGACAGGAAAGTTGATAGATATTGATGTTGAGGCAGTAAAAAAAGCGGTTCAAACATTCAATTTGTCCCCAGCTTTAGTATAG	1503	0.4325	MGPTYPTLFHTNFEIYHQFIRCKHGKREATLKTSMAAATYYILPSPKTLSPLFRNPPSIIPSSNVSLLGSLDYSFYCSTRRGNVEANAKKKNPWLDPFDDGEDPDMEYGSLFTDGKQEEDLRPPDDPDNPYGFLKFPSGYSVEIASLALKVRGDVRRCCCVISGGVYENLLFFPAIQMIKDKYPGVQIDVVASERGKQTYELNKNVRWANAYDPDDDFPEPAEYTDMVGVLKNRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYVYPNVNAAGAGLLLSETFVADNLNLSDGGYHMYHQMVDWLGRPFRNVPSQPVPPLKVSISRKLKEVVEAKYEKAGVKKGQFVVIHGIKSDSKASMQSRGDPDSLLPIEVWAEIADAVRDFTPLFVIPHEKERENVEEIYDEEASIVFITTPGQLAALINDSAGVIATNTAAVQLANAREKPCIALFSSEDKGKKFVPQDEENKCIEISSKTGKLIDIDVEAVKKAVQTFNLSPALV	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00081	500	Gene3D	Glycogen Phosphorylase B;	153	306	-	-
	Cca11g00081	500	PANTHER	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	45	500	IPR044983	GO:0009507\|GO:0009773\|GO:0010598
	Cca11g00081	500	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	169	492	-	-
	Cca11g00081	500	Gene3D	Glycogen Phosphorylase B;	331	495	-	-
	Cca11g00081	500	Pfam	Glycosyltransferase family 9 (heptosyltransferase)	370	457	IPR002201	GO:0016757

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00081	-		-	ccaj:109808822	1007.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g00081	11	890659	893668	Cca11g00081	11	890659	893668	ECH