Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00077 ATGGCCATTTCATCTCCATCTTCATCTTTGAACCTCACTTTCCTTCGCCCTCGCTCGCTTCAACCTCTTTCTTTCACTTCCTCTGTTTTCGCTCAGCCTCTCAGAAGCCTCCCCCTCACTCTCAGAGTCGCTACCAAAATCCAGAGCGTTGGAAGCGGAAGAGAAGGCGCCGATCCTAAGGCCGGTGTTTCCCTTTATAAACCTAAATCCTACGAAGTTCTCGTCACCGACGCTGCCAATTCACTCGCCTATGCTCTTCAAGACGGAAACCTTCGTCTCGAAATCGATTTTCCGCCTTTACCCAGCAACATATCTTCTTATAAGGGATCTTCAGATGAGTTCATTGATGCCAACATTCAACTTGCCTTGGCTGTTGTAAGAAAGCTCAAGGAGAAAAAGGAAACCAGAGCTTGCATAGTATTCCCTGATAAACCAGAAAAGCGCCGAGCCTCTCAATTGTTCAAAGCAGCTCTAGATTCAATTGATGGCATTACCATAGGTTCTTTGGATGATGTCCCTGCTGGACCTATGACTTCATTTTTCAGATCTGTCAGGAACACCCTTGATTTTGACTTTGAAGATGACAATGAAGGTCGTTGGCAGTCTAGTGAGCCTCCATCACTCTACATATTCGTTAACTGCAGTACACGTGAACTTGCATATATAGAGAAGTATGTGGAAAAATTTGCTACATCAACACCAACACTTCTATTTAATCTTGAACTAGACACACTGCGTGCTGATTTAGGCCTTCCGGGCTTCCCAGCCAAGGATTTGCACTACCGCTTTCTTTCTCTGTTCACTCCAGTGTTCTACATCCGAATCAGAGAGTATTCGAAGACAGTTGCAATAGCACCTTATATTGTCAATTACAGTGGAGCTGTGTTCCGCCAGTACCCAGGTCCTTGGCAGGTGATGCTTAAACAAGCAGATGGTTCTTATGCTTGCATAGCAGAAAGTGCAACCCGCTTCAGCCTTGGTGAGGCTAAAGAGGAATTGTTGAGGGTCTTGGGACTTAAAGAAGAAGAGGGAAGTTCTCTAGAATTTCTTCGAAGAGGCTACAAGACAAGCACGTGTACACTGTTAGAAGAGACTGTGTTTTGTTGCACCCGCATTTTGAACCGGATGTTACACATGGCAAAGAAACGTGAGGACTTCGCAAGCTCCATCGTGGGCATCCACGTCCATGTCAATAGTTAG 1200 0.455 MAISSPSSSLNLTFLRPRSLQPLSFTSSVFAQPLRSLPLTLRVATKIQSVGSGREGADPKAGVSLYKPKSYEVLVTDAANSLAYALQDGNLRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLKEKKETRACIVFPDKPEKRRASQLFKAALDSIDGITIGSLDDVPAGPMTSFFRSVRNTLDFDFEDDNEGRWQSSEPPSLYIFVNCSTRELAYIEKYVEKFATSTPTLLFNLELDTLRADLGLPGFPAKDLHYRFLSLFTPVFYIRIREYSKTVAIAPYIVNYSGAVFRQYPGPWQVMLKQADGSYACIAESATRFSLGEAKEELLRVLGLKEEEGSSLEFLRRGYKTSTCTLLEETVFCCTRILNRMLHMAKKREDFASSIVGIHVHVNS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00077 399 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 29 359 - -
Cca11g00077 399 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 29 359 IPR044687 -
Cca11g00077 399 Pfam Domain of unknown function (DUF1995) 68 330 IPR018962 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00077 - - gmx:100803725 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00077 11 850242 856242 Cca11g00077 11 850242 856242 ECH