Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00023 ATGGCGGCCGTCGGAGTAGAATTGAAGCACGCAGAGAGTGCACCGGAGGAGAATTGCTCCGCCAAGCCTACCAAGCAAGGCGAGGGGCTCCGCCAGTACTATGCTCTCCACATCCACGAGCATCAGCTCCTCCTCCGCCAAAAGACGCATAATCTCAACCGTCTCGAGGCTCAGCGAAACGAGCTTAATTCCAGGGTGAGGATGCTCCGTGAAGAACTTCAGCTTCTTCAGGAGCCTGGCTCTTATGTTGGTGAAGTCGTAAAAGTCATGGGGAAAAACAAAGTCCTCGTCAAGGTGCATCCAGAAGGAAAGTATGTTGTTGATATTGACAAAAATATTGACATTACAAAGATTACTCCATCCACCCGGGTTGCCCTTAGAAATGACAGCTACGTTCTTCATTTAATTCTGCCAAGTAAAGTGGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATTAAAGAGGTCATTGAGCTTCCCATTAAACATCCCGAGCTTTTTGAGAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCACATCATACTGATTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGATGAAATTGACAGTATTGGATCTGCCCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAACGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCTCTCCTTAGACCTGGGCGGATTGACAGGAAGATTGAATTTCCTAATCCTAATGAAGAGTCTCGGCTAGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGGGGCATAGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTGTGCACTGAAGCTGGAATGTTTGCTTTGAGGGAAAGGAGGGTACATGTGACTCAGGAGGATTTCGAGATGGCTGTGGCCAAGATAGATTTGTTTATGGGAGTGCGGGCGGGAATGGACTTGGCTTTCCATTCACCCTTTTTTCCATCACCATCTCTGAGACTGAGAAGGTCCAATTCTCATAAGCCTTTCACTTTCACCAACTTCTCTTTGCCTTCTGCTCTGGCATATGATTCTGAGTTAGAGAAGAAAAAGCATCAATTGTTGACCTCTGTCCGAGACACTCAAAGGGGCCTCTTAACAACTCCCGATCAACGCTCTTCAATCGAGGAGGCTCTGGTGAGTGTGGAAGGCTACAATAATGGTGACCCAATCCATTTGGCCAAGCTGGATGGAACATGGCGCCTTCAGTATACTTCTGCCCCTGATGTCCTCATTCTCTTCCAAGCTGCTGCTACACTCCCTTTCTTTCAAGTTGGACAGATCTTTCAGAAATTTGAATGTCTTGATCAATCTAATGGAGGTGTTATCCGCAATGTTGTCCGATGGAGTATTCCAACTTTGCTAGAGGAAGAAGAAGGTGCTACACTGCTTGTATCTGCCAAGTTTACTGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGCATTAG 1773 0.4484 MAAVGVELKHAESAPEENCSAKPTKQGEGLRQYYALHIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKIDLFMGVRAGMDLAFHSPFFPSPSLRLRRSNSHKPFTFTNFSLPSALAYDSELEKKKHQLLTSVRDTQRGLLTTPDQRSSIEEALVSVEGYNNGDPIHLAKLDGTWRLQYTSAPDVLILFQAAATLPFFQVGQIFQKFECLDQSNGGVIRNVVRWSIPTLLEEEEGATLLVSAKFTVVSVRNIYLQFQEH 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00023 590 Pfam PAP_fibrillin 455 589 IPR006843 -
Cca11g00023 590 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Cca11g00023 590 MobiDBLite consensus disorder prediction 1 25 - -
Cca11g00023 590 PANTHER BNAA02G04630D PROTEIN 23 402 IPR035261 GO:0036402
Cca11g00023 590 Gene3D - 149 330 IPR027417 -
Cca11g00023 590 Pfam ATPase family associated with various cellular activities (AAA) 196 329 IPR003959 GO:0005524|GO:0016887
Cca11g00023 590 Gene3D - 335 403 - -
Cca11g00023 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 401 IPR027417 -
Cca11g00023 590 Gene3D - 37 148 IPR012340 -
Cca11g00023 590 Coils Coil 38 72 - -
Cca11g00023 590 SMART AAA_5 192 332 IPR003593 -
Cca11g00023 590 Pfam Proteasomal ATPase OB C-terminal domain 83 138 IPR032501 -
Cca11g00023 590 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 23 402 - -
Cca11g00023 590 CDD AAA 162 329 - -
Cca11g00023 590 Pfam AAA+ lid domain 353 395 IPR041569 -
Cca11g00023 590 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 42 401 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00023 Cca-Chr11 270744 278711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00023 139 384 Calmodulin-binding Proteins AT3G56690 41.870 7.28e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00023 K03066 - gmx:100812783 750.355