LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00010	ATGTGGAGGCTGAAGATAGCAGAGGGTGGAAAAGAGCCATACATATTCAGCACAAACAATTTCGTGGGAAGGCAGACATGGGAGTTTGATCCTCAAGCAGGTACGGCGGAGGAACGAGCTGAGGTCGAAGCAGCTCGCATTCAATTCTACAATAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTGCTTTGGCGCTTTCAGATTCTCAGACAAAATAACTTCAAACAAACAATAGCTTCTGTCAACATACAAGATGGAGAAGAAATAACATATCAAAAGGCCACCACCGCCATGAGAAGGGCCGCGCATCACCTATCCGCATTGCAGACCTCTGACGGCCATTGGCCTGCACAAATTGCAGGTCCTCTCTTTTTCCTTCCACCTTTGGTGTTTTGCATGTATATTACCGGGCATCTCGATTCGGTATTTCCAGAAGAGTATCGCAAAGAAATTCTTCGTTACATATACTATCATCAGAATGAAGATGGAGGGTGGGGACTACACATTGAGGGTCACAGCACCATGTTTTGTACTGCACTAAACTATATCTGTATGCGAATTCTTGGAGAAGGGCCTAATGGTGGTCTTGACGATGCTTGTGCTAGAGCAAGAAAATGGATTCATGATCATGGTGGTGTAACACACATACCTTCATGGGGAAAAACTTGGCTTTCGATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCTTCATTTCTTCCTATGCATCCAGCTAAAATGTGGTGTTACTGTCGATTGGTGTACATGCCCATGTCTTACTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTGAGAGAGGAGCTCTTTACTCAACCTTATGAAAAAGTTAATTGGAAGAAAGCACGTCACCAATGTGCAAAGGAAGATCTTTACTATCCCCATCCTTTGATACAAGATCTAATATGGGATAGTTTATACATATTCACTGAGCCACTACTTACTCGTTGGCCTTTCAACAAACTTGTTAGAGAAAAGGCCCTTCAAGTAACAATGAAACATATTCATTATGAAGATGAGAACAGTCGATACCTAACCATCGGGTGTGTGGAAAAGGTTTTATGCATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGAGTCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAAAGTTTTGGTAGCCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTACTTGCCACTAACCTAATTGAGGAAATTGGTCCTGCACTTGCAAAAGGGCATGATTTCATCAAGAAGTCTCAGGTGAGGGATAACCCTTCAGGAGATTTTAAGAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGTGCTGTCTACTTCTATCAATGTTGCCGCCGGAGATTGTGGGAGAAAAGATGGAAGCTGAAAGGTTATATGATTCAGTGAATCTGCTATTGTCGCTTCAGAGTAAAAAAGGTGGTTTAGCAGCATGGGAACCAGCAGGAGCTCAAGAGTGGTTGGAATTACTGAATCCGACAGAATTTTTTGAGGACATAGTAGTTGAGCATGAATACGTTGAGTGCACTGGATCTGCAATTCAAGCTTTAGTTTTGTTCAAGAAGCTATATCCGGGGCATAGGAAGAAAGAGATAGAGAATTTCATAAGCAATGCAGTTCGGTTCCTTGAAGAGACACAAACAGCTGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGTTCTTGGTTTGCCCTTGGTGGTCTAGCAGCTGTTGGCAAAACTTACAACAACTGTGCTGCCATTCGCAAAGCTGTTAAATTTCTACTTGGAACACAGAGAGAAGATGGTGGGTGGGGAGAGAGTTATCTTTCAAGCCCAAAAAAGATATACGTACCTCTTGAAGGAAGTCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGTCTAATTCATACCGGGCAGGCAGAGAGAGACCCTACTCCTCTTCATCGTGCTGCAAAGTTGATTATCAATTCTCAATTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACTGGAGTATTTATGAAAAATTGCATGTTGCATTACCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATTGTAGGCGGGTTCCATTGCCTTCCGCTCAACTTTAA	2289	0.4321	MWRLKIAEGGKEPYIFSTNNFVGRQTWEFDPQAGTAEERAEVEAARIQFYNNRFKVKPCADLLWRFQILRQNNFKQTIASVNIQDGEEITYQKATTAMRRAAHHLSALQTSDGHWPAQIAGPLFFLPPLVFCMYITGHLDSVFPEEYRKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPNGGLDDACARARKWIHDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDENSRYLTIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMTMQSFGSQEWDAGFAVQALLATNLIEEIGPALAKGHDFIKKSQVRDNPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEAERLYDSVNLLLSLQSKKGGLAAWEPAGAQEWLELLNPTEFFEDIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFISNAVRFLEETQTADGSWYGNWGVCFTYGSWFALGGLAAVGKTYNNCAAIRKAVKFLLGTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHTGQAERDPTPLHRAAKLIINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYCRRVPLPSAQL	762

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00010	762	Pfam	Squalene-hopene cyclase N-terminal domain	99	402	IPR032697	-
	Cca11g00010	762	SFLD	Prenyltransferase Like 2	84	754	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Cca11g00010	762	ProSitePatterns	Terpene synthases signature.	605	619	IPR002365	GO:0016866
	Cca11g00010	762	PANTHER	TERPENE CYCLASE/MUTASE FAMILY MEMBER	1	756	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Cca11g00010	762	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	121	410	IPR008930	-
	Cca11g00010	762	PANTHER	LUPEOL SYNTHASE 1	1	756	-	-
	Cca11g00010	762	TIGRFAM	squalene_cyclas: squalene/oxidosqualene cyclases	97	751	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Cca11g00010	762	Gene3D	-	119	414	-	-
	Cca11g00010	762	CDD	SQCY_1	98	751	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Cca11g00010	762	Pfam	Squalene-hopene cyclase C-terminal domain	418	752	IPR032696	-
	Cca11g00010	762	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	351	756	IPR008930	-
	Cca11g00010	762	Gene3D	-	493	723	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00010	Cca-Chr11	166725	175558	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00010	K15813		-	ag:BAA89815	1533.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g00010	11	166725	175558	Cca11g00010	11	166725	175558	ECH