Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00006 ATGGCGGCAACCCAACCACCGCAGGCTCCGGATCGTACCTCCGAAGAGATACCAGCTGAACCAGATAACATGAAGGAGCAGGGTACAACAACTATAGGTCATTCAAGGGAGACAACAAGTCAATCAGGATCTTTAGGTTCAGGTGGAGATTGTCCTGTATATCCTCCTAATGTGTATGCTCCCCAGGCCCAGGCTTTCTACTATAGAGGTTTTGACAACGGCAATGGTGAATGGGATGAATATTCTCCATATGTCCATTCTGACGGATTAGAAATTGGATCTCCTGGTGTCTACAGTGAAAATCCATCTCTTATTTTCCACTCTGGATATGGCTTCAACCCTCAAATGCCTTATGGACCATATTCCCCAGTTACCACACCTTTGCCTTCTGTTGGCGGAGACACACAGTTATACTCCCCTCAGCAATTTCCATACTCTGGGCCACCTTATTATCATCAGCTGGTTCCTCCTAGCTTATCATATCTTAATTCACCTACTCCAGTTTCACAGCCAGAGCTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCAGGATATCCATCAGTGGGATCTTTTGGTAGAGGCAGTTTTCCGGTTGCCCCTGGTTCCTTCAGCTTTCATGAATCGCAACAAGGATTTGAAGGATCAAGATCCGGTGGAATCTGGTCAGATTGCTCAAAACCCTCGGAAAGACAGAGATCTTTGATGCCTCTATCGCCATCTATTTCTCCACAGCCAATGGGCTCACTTGGGTCATTTGGGCCTAGTGTTGGAATGGCTTCTCATCAACATCAATCATTATATGGATTTGGATCTGGTTCAAACTCCTATGGCAGGGGCTACCTGCCTAACCAGGGTTCTAGCTTTGGAGGCACTTCCATTTCCAATCTCAATGTTAATGATAGGAGTTGTGCTTCTTTTGAAAATAGCAGACGACAAGGGAGGCCAATAGCTTCTCTGTGCAATTGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCAAGGGCCTCAAAGTTGAAAAATCAAATTTCAGCTGAAAATAATTCTGTGGATAATGGTAAAAATAGTGCACCTATTGCCAAGTTCCAAAATGAATCACTCAATCGCTCAGATTTTGCCACAGATTACAAGGATGCCAAGTTTTTTGTCATCAAATCTTATAGTGAAGATAATGTTCACAAGAGCATTAAATATGGTGTCTGGGCTAGTACACCAAATGGAAACAGAAAGTTAGATGCTGCTTATCGGCAAGCAATGGAGAAGCAAGATGCCTGTCCTATATTTCTCTTTTTTTCGGTAAATGCTAGTGCTCAGTTCTGTGGGGTAGCTGAAATGGTTGGACCTGTCAATTTTGATAAGAGTGTAGACTTCTGGCAGCAAGATAAGTGGAGTGGGCAGTTTCCTGTGAAGTGGCACATAATTAAAGATGTTCCGAACAGTCAGTTTCGTCACATTGTTCTTGAGAATAATGATAACAAGCCTGTAACTAACAGTCGAGATACTCAGGAGGTGAAGTTGCCACAGGGGATTGAAATGTTGACCATTTTTAAAAACTATGAAACTGATGTGTCCATCCTGGATGATTTTGAATTCTATGAAGACCGGCAGAAGGCTATGCAAGAAAGGAAGAACAGGCAGCAAAGCAGCATGATGGCTACAGGATTAGTTGGAGAAAATGAACATAGGAATGCTGTTAACACTACTGGTGATTTCATGAAGCAGATGTCAAAGAGCTTTGCTCTAGTTGTCCGCTTAGATGAGAATAACAACGAAGTAGTTGCTGCGGACAGAGATAGTTTAGTCTCTCATGGTCCCATTGGCAATGTAGTTAAACCTGATGATGGTCAATCAGTGACTGCTGCTTCGACCCAAACCAATTAG 1914 0.4321 MAATQPPQAPDRTSEEIPAEPDNMKEQGTTTIGHSRETTSQSGSLGSGGDCPVYPPNVYAPQAQAFYYRGFDNGNGEWDEYSPYVHSDGLEIGSPGVYSENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSPQQFPYSGPPYYHQLVPPSLSYLNSPTPVSQPELTNLVGIDQQVDNMFFGPRAGYPSVGSFGRGSFPVAPGSFSFHESQQGFEGSRSGGIWSDCSKPSERQRSLMPLSPSISPQPMGSLGSFGPSVGMASHQHQSLYGFGSGSNSYGRGYLPNQGSSFGGTSISNLNVNDRSCASFENSRRQGRPIASLCNCNGTLDILSEQNRGPRASKLKNQISAENNSVDNGKNSAPIAKFQNESLNRSDFATDYKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYRQAMEKQDACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLPQGIEMLTIFKNYETDVSILDDFEFYEDRQKAMQERKNRQQSSMMATGLVGENEHRNAVNTTGDFMKQMSKSFALVVRLDENNNEVVAADRDSLVSHGPIGNVVKPDDGQSVTAASTQTN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00006 637 Gene3D ph1033 like domains 367 541 - -
Cca11g00006 637 MobiDBLite consensus disorder prediction 615 637 - -
Cca11g00006 637 PANTHER EVOLUTIONARILY CONSERVED C-TERMINAL REGION 5 13 613 - -
Cca11g00006 637 MobiDBLite consensus disorder prediction 24 47 - -
Cca11g00006 637 MobiDBLite consensus disorder prediction 1 49 - -
Cca11g00006 637 MobiDBLite consensus disorder prediction 223 252 - -
Cca11g00006 637 Pfam YT521-B-like domain 390 528 IPR007275 GO:0003723
Cca11g00006 637 ProSiteProfiles YTH domain profile. 390 527 IPR007275 GO:0003723
Cca11g00006 637 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 13 613 IPR045168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00006 Cca-Chr11 79274 95061 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00006 K20102 - gmx:100816860 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00006 11 79274 95061 Cca11g00006 11 79274 95061 ECH