Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00005 ATGGCTGGTTTTCTAAGTGCACTTGCGCCTAACTATTTATTATTAATTGTCCTTCGATCTTTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTAGAGTTTGTTCCTGCCCCCAATAGAGGCACCTGGATGGTTGTCTTTTCAGCATTTTGGACTGTTGGTACAATTTTTGAGGCCTCACTTGCATGGATTGTGATGCCAAAACTGGGTTGGAGGTGGCTTCTTGCACTGTCTTCTGTTCCCACTTCTTTCCTTCTTCTGTTCTACAAAGTGACTCCTGAGTCGCCAAGATACCTATGCTTGAAAGGTAGAACAGCTGATGCAATTAATGTTTTGGAGAAAATAGCAAGAGTAAATGGAAGAGAACTTCCTTCAGGTACCCTTGTTTCCGACCACGAAATTGAGCTACAAAAAATTGATAACCCTTCAGAGGATGATCGCTTGCTTTCACCAAGAACAAATGAAGTTGAAGATCCTAAAGAAATAGTTTCCAATTTAGGTGGTATCTCATCGTTGTCAGTGCTTCTCTCACCAAAATTGGCAAGGTCAACCCTTCTATTATGGGCTGTGTTCTTTGGTAATGCCTTTTCATATTATGGCCTTGTTTTGTTGACCACTGAGTTAAATGGACACAGTAAATGCATGTCACATAAATTGCAGACAGAGAAGTCCCAGGATGTTAGTTACAAGAGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCGTCTTATCGGCTGCAGCAGTAGACAAACTCGGTCGTAAGCTCTCAATGTCAACCATGTTCTTCATGTGCTGTATTTTCCTCCTCCCATTAATATTCCGTCTGCCTGAAGGCTTAACAACGAGCCTTTTGTTTCTAGCTCGCATATGCATTACAGCAACCTTCACAATTGTGTATATATATGCACCAGAGATGTATCCAACATCAGTTAGAACAACTGGTGTGGGAGTTGCAAGTTCGGTGGGCAGAATTGGTGGAATGATATGTCCTTTGGTAGCTGTGGGTTTAGTACATGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGAGATCGTAGCTCTTCTTTCAGGAATATGTGTAATGTTCTTCCCACTTGAGACCATGGGCCAAGAACTGAGAGATAATGTGCAAGTCTAA 1158 0.4214 MAGFLSALAPNYLLLIVLRSLVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTVGTIFEASLAWIVMPKLGWRWLLALSSVPTSFLLLFYKVTPESPRYLCLKGRTADAINVLEKIARVNGRELPSGTLVSDHEIELQKIDNPSEDDRLLSPRTNEVEDPKEIVSNLGGISSLSVLLSPKLARSTLLLWAVFFGNAFSYYGLVLLTTELNGHSKCMSHKLQTEKSQDVSYKSVFIASFAELPGLVLSAAAVDKLGRKLSMSTMFFMCCIFLLPLIFRLPEGLTTSLLFLARICITATFTIVYIYAPEMYPTSVRTTGVGVASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIVALLSGICVMFFPLETMGQELRDNVQV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00005 385 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 375 IPR020846 GO:0022857
Cca11g00005 385 ProSitePatterns Sugar transport proteins signature 1. 251 266 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g00005 385 Pfam Sugar (and other) transporter 3 380 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca11g00005 385 SUPERFAMILY MFS general substrate transporter 3 380 IPR036259 -
Cca11g00005 385 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER-LIKE, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 2 384 - -
Cca11g00005 385 Gene3D MFS general substrate transporter like domains 1 384 IPR036259 -
Cca11g00005 385 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 2 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00005 Cca-Chr11 72122 76804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00005 3 383 Organic Solute Cotransporters AT3G20660 26.667 7.12e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00005 - - gmx:100816337 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00005 11 72122 76804 Cca11g00005 11 72122 76804 ECH