Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00003 ATGAACGCAGCAGCGTCAGCAACAACAGCTAATAGCAGTGTTTACTCTCTTTCCTCGGGTTCAAATATCAAACGTTTCCTGTTCTTCAATGATGCTCGTCAACATCAACGCTCTCGGTTCCTGCTAGCTCCCAGGGCTTCTGCTCCGAAGGACAGCAAGAACGATGATGATGAGATACAGAAACAGCAACCATCTGTGTCGCTTAGCCTGGACGACGTCAACCCTGTGGGACTCGGTCGAAGATCGCGGCAGTTATTCGATGAGGTTTGGAGAAAGTTTTCCGGATTGGGTCAGATTTCTAGGACTATCCGCACGGATGATCAGGAGGCTCTTGACGCCCTTCTCGTCCGCGAAGGTCCCATGTGCGAGTTCGCAATCCCTGGCGCTCAGAATACAACTGTACTCGTTGTTGGTGCCACCAGCCGCATTGGTCGCATCGTTGTTCGAAAGCTCATGCTCAGAGGTTACGCCGTCAAGGCTCTGGTAAGAAAGGCAGATCAGGAGGTGGTTGACCTGCTTCCAAGGTCAGTAGAGATAGTGATTGGGGATGTTGGTGATCCCACCACTGTCAAGTCTGCTGTAGAAGGTTGTAACAAAATAATATATTGTGCCACTGCTCGCTCTGCTATAACTGGGGATCTCTTCAGGGTTGATCATCGAGGAGTTTGTAATCTAACTAAAGCATTTCAGGATCACAATAATAAATTGGCCCAATCACGGGCTGGGAAAAGCAGCAAAAGTAAGCTCTTGATTTCCAAATTCAAATCTGCATCTTCGTTGGATGGATGGGATGTTCGTCAAGGAACTTACTTCCAAGATGTAGTCACCACAAAATATGATGGAGGGATGGATGCTAAATTTGAGTTCACTGAGAATGGAGATGCCGTTTTCTCAGGGTATGTCTTCAATAGAGGAGGCTATGTGGAACTTTCAAAAAAACTTTCTCTACCATTAGGTTATACTCTTGACAGGTACGAGGGTCTGGTTCTCTCTGTTGGTGGCAATGGAAGATCTTATGTATTAATTCTAGAAGCTGGTCCTTCGGCAGATCCAAGTCAGAGTAGATTGTATTTTGCAAGAATTAGTACAAAAGTGGGATTTTGTAGGGTTAGAGTACCATTTTCATCATTCCGCCCAGTGAAACCAGATGATCCAATGTTAGATCCTTTTCTTGTACATACATTGACGATACGCTTTGAGCCTAGAAGACAGAGGCCTGCTGAAATAAATGCAACAGTGAAACAGGATTTGAGAAGCTTTAAGCTTATATTGGAATATATTAAAGCCTTGCCTACTGGGCAAGAAACTGATTTTGTCTTAGTTTCATGTTCTGGACTAGGAATTGAGCCTTCCAGGCGGGAACAGGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTAAGAAGATCTGGCCTTGGATACACAATAGTTCGTCCTGGTCCATTGCAGGAAGAACCTGGAGGGCAGCGTGCTCTAATATTTGATCAAGGAAACAGAATATCTCAGGGTATCAGCTGTGCTGATGTAGCTGATATATGTGTGAAGGCACTGCATGATACAACTGCAAGAAACAAAAGCTTTGATGTATGTTACGAGTATATTGCCGAGGAAGGAAGGGAGCTTTATGAGCTGGTTGCACACTTGCCCGACAAAGCAAATAACTACTTGACACCAGCACTTTCTGTCTTAGAGAAGAATACCTGA 1704 0.4495 MNAAASATTANSSVYSLSSGSNIKRFLFFNDARQHQRSRFLLAPRASAPKDSKNDDDEIQKQQPSVSLSLDDVNPVGLGRRSRQLFDEVWRKFSGLGQISRTIRTDDQEALDALLVREGPMCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYAVKALVRKADQEVVDLLPRSVEIVIGDVGDPTTVKSAVEGCNKIIYCATARSAITGDLFRVDHRGVCNLTKAFQDHNNKLAQSRAGKSSKSKLLISKFKSASSLDGWDVRQGTYFQDVVTTKYDGGMDAKFEFTENGDAVFSGYVFNRGGYVELSKKLSLPLGYTLDRYEGLVLSVGGNGRSYVLILEAGPSADPSQSRLYFARISTKVGFCRVRVPFSSFRPVKPDDPMLDPFLVHTLTIRFEPRRQRPAEINATVKQDLRSFKLILEYIKALPTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDTTARNKSFDVCYEYIAEEGRELYELVAHLPDKANNYLTPALSVLEKNT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00003 567 SUPERFAMILY Galactose-binding domain-like 250 389 IPR008979 -
Cca11g00003 567 PANTHER HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 47 566 - -
Cca11g00003 567 Pfam Complex I intermediate-associated protein 30 (CIA30) 281 381 IPR013857 -
Cca11g00003 567 MobiDBLite consensus disorder prediction 41 73 - -
Cca11g00003 567 Pfam NAD(P)H-binding 454 519 IPR016040 -
Cca11g00003 567 Pfam NAD(P)H-binding 138 234 IPR016040 -
Cca11g00003 567 PANTHER EPIMERASE-RELATED 47 566 - -
Cca11g00003 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 535 IPR036291 -
Cca11g00003 567 Gene3D - 390 543 - -
Cca11g00003 567 Gene3D - 129 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00003 Cca-Chr11 35728 55677 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00003 - - aprc:113857040 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00003 11 35728 55677 Cca11g00003 11 35728 55677 ECH