Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01987 ATGTCAATGTCAGGATTTGAAGGGCAATGTAGTAATGATGAGATTAGGGAGAGGAGGTCAGATGTTGAGAACTCTGAAGACGAGAGAAGGCGATCAAGAATTGGAACCTTGAAGAAGAAGGCAATAAATGCGTCATCTAGATTCACTCATTCTCTTAAGAAAAGAGGGAAAAGGAAAATTGATTATAGGGTTCCGTTGGTGTCCATCGAGGATGTAAGAGATGCGCGGGAGGAGACTGCTGTCCATGAATTGCGCCAAAAACTCGTGGAGAGAGGATCTTTACCTCCTAGGCACGATGACTATCATACATTGTTAAGGTTTCTTAAAGCTAGGGACTTTAACATTGAGAAGACAATTCACATGTGGGAAGAAATGCTTACATGGCGAAAAGAATATGGAACTGATGCCATCCTTGAGGATTTTGAATTTGGAGAGCTGGAAGAAGTATTGCAGTATTATCCTCAAGGGTACCATGGAATTGATAAGGAAGGTAGGCCTGTTTACATTGAGAGACTTGGGAAAGCCCATCCAAGTCGCCTAATGCACATCACTACAATAGATCGATATTTGAAATACCACGTCCAGGAGTTTGAAAGGACCCTACAGGAGAAGTTTCCAGCATGCTCCATTGCAGCAAAGAGACGAATATCTTCAACAACAACAATATTGGATGTACAGGGCTTGGGAATGAAAAATTTCTCACGTACTGCTGCAAATCTCTTGTCTGCTATGACAAAAATAGATAGCAGTTACTATCCTGAGACATTACATCAAATGTATGTTGTCAATGCTGGTTCTGGCTTTAAGAAGCTTCTTTGGCCTGCTGCACAAAAGTTTCTTGATCCCAAAACTATTGCGAAGATACAGATTCTTGAACCCAAATCTTTATGTAAATTACTGGAAGTTATTGACTCTAGTCAGTTGCCAGACTTTCTGGGTGGTTCTTGTACATGTGCTGCAGAAGGTGGATGTCTTCGGTCCAACAAGGGTCCATGGAATGATTCTGATATCATGAAGCTGGTACATAATGCGGAGGCAACATTTGTGAGACAAATCACCAGAGTGCCCAATGGACAACAGAAAACTGTCTCCTTTCAAATGCATCTACTGAAGGAACGATGCAGTGATACATCAACAGCTGAATCAGGGTCTGATATTAATGATTACTCTTCTCCCAACAGACAGGGTAGCTGTCCTTATCCTCATTTAGCCCCAGTTCATGAAGAAGTTAAAGCACCAGATGTCAATGGCTACTACAGTTGTGATGATAGTGCTCTAGCAGTTGAGAAAGTGGTTGAAAGTGATGACCTTAATCGAGCACAGACAATGCAAGCTAATGATACAGGGAATGTTGCTTGTAGAACAGATTCAGGAGGTACTTCTGTCAGCAATTGGTTCAGCATTGTAAAGGAAAAAGTTGAGAAAATAAATGTCTGTGGTAGAAGCAGCTTCTGA 1455 0.4151 MSMSGFEGQCSNDEIRERRSDVENSEDERRRSRIGTLKKKAINASSRFTHSLKKRGKRKIDYRVPLVSIEDVRDAREETAVHELRQKLVERGSLPPRHDDYHTLLRFLKARDFNIEKTIHMWEEMLTWRKEYGTDAILEDFEFGELEEVLQYYPQGYHGIDKEGRPVYIERLGKAHPSRLMHITTIDRYLKYHVQEFERTLQEKFPACSIAAKRRISSTTTILDVQGLGMKNFSRTAANLLSAMTKIDSSYYPETLHQMYVVNAGSGFKKLLWPAAQKFLDPKTIAKIQILEPKSLCKLLEVIDSSQLPDFLGGSCTCAAEGGCLRSNKGPWNDSDIMKLVHNAEATFVRQITRVPNGQQKTVSFQMHLLKERCSDTSTAESGSDINDYSSPNRQGSCPYPHLAPVHEEVKAPDVNGYYSCDDSALAVEKVVESDDLNRAQTMQANDTGNVACRTDSGGTSVSNWFSIVKEKVEKINVCGRSSF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01987 484 MobiDBLite consensus disorder prediction 11 34 - -
Cca10g01987 484 Pfam CRAL/TRIO, N-terminal domain 98 124 IPR011074 -
Cca10g01987 484 SMART sec14_4 145 317 IPR001251 -
Cca10g01987 484 CDD SEC14 146 314 IPR001251 -
Cca10g01987 484 Gene3D - 133 346 IPR036865 -
Cca10g01987 484 SUPERFAMILY CRAL/TRIO N-terminal domain 74 141 IPR036273 -
Cca10g01987 484 Pfam CRAL/TRIO domain 151 314 IPR001251 -
Cca10g01987 484 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 145 320 IPR001251 -
Cca10g01987 484 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 18 477 - -
Cca10g01987 484 SUPERFAMILY CRAL/TRIO domain 145 341 IPR036865 -
Cca10g01987 484 SMART CRAL_TRIO_N_2 100 125 IPR011074 -
Cca10g01987 484 Gene3D - 65 132 - -
Cca10g01987 484 MobiDBLite consensus disorder prediction 1 34 - -
Cca10g01987 484 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01987 Cca-Chr10 37860990 37864589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01987 98 322 Acyl Lipid Metabolism Gene Families AT1G55840 32.618 2.13e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01987 - - gmx:100818938 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01987 10 37860990 37864589 Cca10g01987 10 37860990 37864589 ECH