Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01254 ATGATGTGTGTGACAGGCAAAAGCATTGATTTTGCTGGCAAAAACTTGGTCTCTTGTGGCTGTTCTTCCAATGCTTCGTTTGACAGGTACACTGTGAGGAGCTGCGTGAAGGTGAATTCCAAAGGGTGTGGTGGCAGTGGCAGAGGCCATGGGGCTCGTAAATTGGTTTGTTGTAGGAGGAGGAACACTCAATGTCGTGTTTCTTCTATGAAGACTGCGGAGCCTACGCTGAATGGGGGGACTAAAGCAATTGAAGGCCTTACCACAGGATTGGACTTGAAGGGTTATTCTGAATCCCCCATTTCGCCGGCTAGGTTGTTTGAAGTGGTTGCTGATGATTTGCTAACTCTCAATAAAAATCTTCAGTCGATTGTAGGTGCAGAAAATCCAGTTTTAATGTCTGCAGCTGAGCAGATTTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTGGTGTTCTTGGTGTCAAGGGCAACTGCTGAGCTACTTGGCTTGAAGGAACTTACTGTAAAGCATCGACGTTTAGCAGAGATAATTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTACTAGATGAGAGTGACCTTCGACGAGGGAAGAAAACTGTTCATCAAATGTTTGGAACAAGAGTTGCAGTGCTGGCTGGAGACTTCATGTTCGCACAGTCATCATGGTATCTAGCCAACCTTGAAAATATTGAAGTCATTAAACTTATCAGCCAGGTTATCAAAGATTTTGCAAGTGGGGAAATAAGGCAGGCATCTAGCCTGTTTGATTGCGATTTACATCTTGATGAGTATCTAATTAAGAGCTATTATAAGACAGCGTCCTTGATTGCTGCCAGCACAAAAGGAGCTGCGATCTTCAGCGGTGCTGACAGCAGCATCACTGAGAAAATGTATGAATATGGAAAGAATCTTGGTCTATCCTTCCAAGTTGTGGATGACATATTGGATTTCACTCAATCCGCCGAGCAACTGGGAAAGCCAGCTGGCTCCGACCTTGCCAAGGGCAACCTGACTGCACCGGTAATCTTTGCATTGGAGAAAGAACCAAAGTTGAGGGATATCATTGAGTCTGAATTCAGTGAGGTTGGTGCCCTTGATGAGGCCATCAATTTGGTCAAGGGTTGTGGGGGCATTGAAAGAGCACAGGAGTTGGCAAAAGAGAAAGCTGATCTTGCAATTCAGTGTCTCCAATGCCTTCCCCAGAGTGTGTTTCGTTTAGCTCTTGAGGATATGGTGGCATATAATCTTCAACGGATTGCATAA 1278 0.4484 MMCVTGKSIDFAGKNLVSCGCSSNASFDRYTVRSCVKVNSKGCGGSGRGHGARKLVCCRRRNTQCRVSSMKTAEPTLNGGTKAIEGLTTGLDLKGYSESPISPARLFEVVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVSRATAELLGLKELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKKTVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIRQASSLFDCDLHLDEYLIKSYYKTASLIAASTKGAAIFSGADSSITEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRDIIESEFSEVGALDEAINLVKGCGGIERAQELAKEKADLAIQCLQCLPQSVFRLALEDMVAYNLQRIA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01254 425 Pfam Polyprenyl synthetase 131 376 IPR000092 GO:0008299
Cca10g01254 425 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4 424 - -
Cca10g01254 425 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 4 424 - -
Cca10g01254 425 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 102 424 - -
Cca10g01254 425 Gene3D Farnesyl Diphosphate Synthase 102 424 IPR008949 -
Cca10g01254 425 ProSitePatterns Polyprenyl synthases signature 1. 187 201 IPR033749 -
Cca10g01254 425 ProSitePatterns Polyprenyl synthases signature 2. 309 321 IPR033749 -
Cca10g01254 425 SUPERFAMILY Terpenoid synthases 105 423 IPR008949 -
Cca10g01254 425 SFLD Isoprenoid Synthase Type I 135 418 - -
Cca10g01254 425 CDD Trans_IPPS_HT 127 423 IPR000092 GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01254 Cca-Chr10 16628803 16632956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01254 K05356 - gmx:100783538 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01254 10 16628803 16632956 Cca10g01254 10 16628803 16632956 ECH