Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01253 ATGGCTAATGGACAGAAAACTTGGTGTGTGGCAAAGCCTTCAACAGACCAGGCTACCCTTTTGGCGAACCTCAATTATGCCTGCTCTCAAGTTGATTGCAGGATTCTGCAGAGAGGCTGCCCCTGCTCCTCCCCTGACAGCCTCATGAACCATGCCTCCATAGCCATGAACCTCTATTACCAATCTAGGGGAAGAAACCACTGGAATTGTGATTTCAGGGCCTCTGGCCTTATTGTTGTCACTGATCCAAGTTATGGTAACTGCATTTACGCACAGTAG 279 0.4875 MANGQKTWCVAKPSTDQATLLANLNYACSQVDCRILQRGCPCSSPDSLMNHASIAMNLYYQSRGRNHWNCDFRASGLIVVTDPSYGNCIYAQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01253 92 Pfam X8 domain 7 75 IPR012946 -
Cca10g01253 92 PANTHER BETA-1,3 GLUCANASE 1 90 IPR044788 -
Cca10g01253 92 SMART X8_cls 7 90 IPR012946 -
Cca10g01253 92 Gene3D - 1 90 - -
Cca10g01253 92 PANTHER GLUCAN ENDO-1,3-BETA-D-GLUCOSIDASE-LIKE 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01253 Cca-Chr10 16604186 16606153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01253 7 88 Glycoside Hydrolase AT2G05790 44.048 9.62e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01253 - - gmx:100804767 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01253 10 16604186 16606153 Cca10g01253 10 16604186 16606153 ECH